Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0940
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.31 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    29   0.72 
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   3.8  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    27   3.8  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   5.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = -3

Query: 501 SPARWPRSTPQRSS--DRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSY 328
           S  R P S P R S    S +S  P+ S    +P +  P      P V +P  +   PS 
Sbjct: 135 SELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP-VKSPPSAPSLPSA 193

Query: 327 TLPLPPTRNEGPMSQ 283
             P+PP     P+SQ
Sbjct: 194 VPPMPPKVPPPPLSQ 208


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 474 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPL 316
           P+ S+++   S++ L SS    P +AT     LYP   APT   P  S + PL
Sbjct: 219 PRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPT--PPASSSSSPL 269


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
 Frame = -3

Query: 525 CRCATAR*SPARWPRSTPQR-------SSDRSASSIAPLGSSVLKLPM-NATPMDLELYP 370
           CR AT    P      T Q        S+ R A++     + + ++P  N  P D +   
Sbjct: 532 CRLATTHVEPTEVTAFTTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPPFDGD--- 588

Query: 369 *VCAPTCSQPEPSY 328
            VC P C+ P P+Y
Sbjct: 589 -VCPPACNTPPPNY 601


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 467 RCGVERGHLAGDYRAVAHRQLIASESPGRKLYNQIRRWP*VAGERGL 607
           + GV+  +L GD   +AH+Q   +    R   + +  W   A ER +
Sbjct: 168 KLGVQLSYLDGDAGIIAHKQTQETHERIRNWLSSLNSWQLAAFERSV 214


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 553 EALQPDTTLALSGWRTWTPSRTRNIITAYRIA 648
           E++QPDT   LS W T   + T NI+ + + A
Sbjct: 156 ESVQPDTMSCLSPWGTERLTATINILRSDKTA 187


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -3

Query: 309 TRNEGPMSQYCKASMWLVWIFRTSSSQPAS 220
           T+   P   Y     WLVW     +S PAS
Sbjct: 447 TQGSAPPWHYIPCQSWLVWYPSEDASNPAS 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,692
Number of Sequences: 5004
Number of extensions: 57991
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)