Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0940
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58211| Best HMM Match : ANF_receptor (HMM E-Value=0) 33 0.19
SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08) 32 0.44
SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 29 4.1
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_25174| Best HMM Match : Transposase_23 (HMM E-Value=2.8) 29 5.4
SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73) 29 5.4
SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5) 29 5.4
SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0) 29 5.4
SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9) 29 5.4
SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35) 28 7.1
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 28 7.1
SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062) 28 7.1
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_58211| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 1316
Score = 33.5 bits (73), Expect = 0.19
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = -2
Query: 595 SSHSGPASYLVVELPAGA-LRGNELSVRHGAVVPREVAALHAAAQQRPQRLQHRAARLVR 419
S H GPASY +V L + ++ S G +PREV + P Q +
Sbjct: 925 SQHDGPASYDIVNLNGNSWIKVGSYSPTRGLSMPREV-VWPGGSLTPPSSKQPSVSSSSE 983
Query: 418 VEVADECDSDGPRVVPVGVRADVQPAGALVHLAVTSHQER 299
V+D P +V +GV V G V + H+ER
Sbjct: 984 PAVSDSVTP--PGLVVLGVVFGVFALGVAVFIGFLIHRER 1021
>SB_31782| Best HMM Match : FH2 (HMM E-Value=1.2e-08)
Length = 1052
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 474 PQRSSDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNEG 295
P + +S+++ PL ++ LP N P+ YP PT P P+ PLP R
Sbjct: 607 PYATRLKSSTNRYPLPTNRYPLPTNRYPLPTNRYP---LPTNRYPIPTNRYPLPKNRYPP 663
Query: 294 PMSQ 283
P Q
Sbjct: 664 PYKQ 667
>SB_56579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1042
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 553 PAGALRGNELSVRHGAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVADEC 398
P A G + + H +P E + RP L H+ RL V + DEC
Sbjct: 704 PRLACAGRDQTYHHSLCIPAE----KPVEEWRPSELGHKLDRLAEVLIIDEC 751
>SB_10740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 408 PMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPTRNEGPMS 286
P+ PM + + C S+ E +Y++ L RN+GP S
Sbjct: 56 PLGYPPMHVPAWQITCETLRSRDERAYSIQLTDRRNKGPRS 96
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +3
Query: 273 PCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPS 392
P N G SD SW + CT++ +G T RT T T PS
Sbjct: 410 PVNGGWSDYSSW----SSCTKSCSGGTRTRTRTCTNPKPS 445
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 273 PCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPS 392
P N G SD SW + CT++ G T RT T T PS
Sbjct: 379 PVNGGWSDYSSW----SSCTKSCGGGTRTRTRTCTNPKPS 414
>SB_25174| Best HMM Match : Transposase_23 (HMM E-Value=2.8)
Length = 135
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 620 RVLDGVHVLQPLRASVVSGC 561
RV GVH +QP+ SV +GC
Sbjct: 33 RVSSGVHTIQPVVTSVAAGC 52
>SB_147| Best HMM Match : LepA_C (HMM E-Value=0.73)
Length = 611
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 462 SDRSASSIAPLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPT 307
+ R +SS + L SSV + +TP L P + + S P PS + LPPT
Sbjct: 276 ASRHSSSSSSL-SSVPSSFLASTPRAATLSPLSSSSSSSSPRPSRDIELPPT 326
>SB_45210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = -3
Query: 651 RRYAIRCD--NVTRS*WSPRSPATQGQRRIWL*-SFRPGLSEAMSCRCATAR*SPARWPR 481
++ + CD + +RS SP SP+ + S + G+S++ SC+ T + S W
Sbjct: 72 KKISTSCDRRDRSRSYSSPVSPSRSNSSSPRMSRSAKRGISKSKSCQTLTIQKSFEPWKH 131
Query: 480 STPQRSSDRSAS 445
ST QR + S S
Sbjct: 132 STVQRRASLSGS 143
>SB_44812| Best HMM Match : DUF586 (HMM E-Value=6.5)
Length = 520
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +3
Query: 228 AARSSCGISRPTTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPS 392
+ R S G S TWR + T +P C A CT T T+RG S
Sbjct: 138 SGRPSPGSSSTPTWRSGKSYTQEPNRLASSWRSCCATAAACTPLTTQE-TSRGSS 191
>SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 446
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +3
Query: 273 PCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTTRGPS 392
P N G SD SW + CT++ G T RT T T PS
Sbjct: 294 PVNGGWSDYSSW----SSCTKSCGGGTRTRTRTCTNPKPS 329
>SB_24295| Best HMM Match : DUF1070 (HMM E-Value=3.9)
Length = 745
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -2
Query: 529 ELSVRHGAVVPREVAALHAAAQQRPQRLQHRAARLVRVEVADECDSD 389
++S R + V A + RP L H+ RL V + DEC D
Sbjct: 613 DVSSRPSRIGEDRVGAEKPIEEWRPSELGHKLDRLAEVIIIDECCKD 659
>SB_41722| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
Length = 343
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -1
Query: 314 LPPGTRVRCP---SIARPPCGWSGYSARAPRSQR 222
+PPGTR R P + ARPP AR PR QR
Sbjct: 214 IPPGTRARSPVDSAKARPPV--DSARARYPRRQR 245
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 342 PEPSYTLPLPPTRNEGPMSQYC 277
P P + P PP N GP +YC
Sbjct: 214 PPPPFGAPPPPALNGGPPREYC 235
>SB_32544| Best HMM Match : Extensin_2 (HMM E-Value=0.0062)
Length = 282
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -3
Query: 483 RSTPQRSSDRSASSI-APLGSSVLKLPMNATPMDLELYP*VCAPTCSQPEPSYTLPLPPT 307
+STP+ SS + + + +PL S L + + P AP S P+PS + PP
Sbjct: 147 KSTPRPSSPQPSFQVRSPLFKSAAFLSSPQPSLRVRTPPFKSAPLFSSPQPSLQVRSPPF 206
Query: 306 RN 301
++
Sbjct: 207 KS 208
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +3
Query: 228 AARSSCGISRPTTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSARTPTGTT 380
A RSS G PT+ T S PRS AR P+ ++ TP+ T
Sbjct: 186 ALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPSTPSTIT 236
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,567,797
Number of Sequences: 59808
Number of extensions: 534332
Number of successful extensions: 2013
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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