Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0940
(755 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 31 0.67
AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical... 30 2.0
Z69885-3|CAA93755.1| 278|Caenorhabditis elegans Hypothetical pr... 29 3.6
U13072-7|AAK31398.2| 382|Caenorhabditis elegans Nematode astaci... 29 4.7
U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 28 8.2
U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 28 8.2
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 31.5 bits (68), Expect = 0.67
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Frame = -3
Query: 324 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 163
L LPPT N + C+ L ++ SSS P +V + TV ++TRL G
Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679
Query: 162 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 16
+ T KP L + S S S L +S ST + W S+SGA
Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
protein F22G12.5 protein.
Length = 2396
Score = 31.5 bits (68), Expect = 0.67
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Frame = -3
Query: 324 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 163
L LPPT N + C+ L ++ SSS P +V + TV ++TRL G
Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679
Query: 162 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 16
+ T KP L + S S S L +S ST + W S+SGA
Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724
>AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical
protein Y54E10A.16a protein.
Length = 427
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -2
Query: 220 RPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNCRVE 41
RP G +LD+ E GP +V +V+ D + D +G F + CRV+
Sbjct: 97 RPDRGKFTILDNAEVAGPEEVLNVNFDSEILQRIFSDPKLGIQFLARYGLIPNTRVCRVQ 156
>Z69885-3|CAA93755.1| 278|Caenorhabditis elegans Hypothetical
protein T04C10.3 protein.
Length = 278
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 641 RYAVIMLRVLDGVHVLQPLRASVVSGCRASGR 546
R ++LRVLDG L+ LR S +G R+ G+
Sbjct: 51 RVEALILRVLDGQSKLETLRDSYQTGLRSHGK 82
>U13072-7|AAK31398.2| 382|Caenorhabditis elegans Nematode astacin
protease protein 7 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 240 SSSQPASVLQKGVTVC-WTMTRLTGRARYDTCTGIKPSHC 124
+S++P+S + +TVC WT R A Y + + P C
Sbjct: 340 NSNKPSSQCEDRITVCWWTADRCRSPAIYQVMSSLCPKTC 379
>U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical
protein C10G11.6 protein.
Length = 425
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 366 VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPASVLQKGV 202
+ +P +P PS ++PLPP + P S Y ++ + ++S+S S L K +
Sbjct: 172 IVSPDVRRPPPSLSIPLPP-MHIPPPSVYFISTPSIYSTAKSSTSTVTSKLSKAI 225
>Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical
protein T24B8.6 protein.
Length = 203
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 396 TPMDLELYP*-VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPAS 220
TP +YP VC+ P PSYT P P +Q+ +S + ++ SSS AS
Sbjct: 133 TPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHY----YQESSSSSAS 188
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/56 (35%), Positives = 24/56 (42%)
Frame = +1
Query: 94 SSRLRRRQ*KAMGRFDPGARVVPGAAREPRHRPAHSHTLLQDGRWLRGARAEYPDQ 261
SSR R+ + M R G R P AA +RP H GR +R YP Q
Sbjct: 123 SSRPRKPEPPTMPRTIQGFRAPPPAATST-YRPPHGSNYDNYGREPASSRRPYPPQ 177
>U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic
helix-loop-helix DNA bindingprotein HLH-3 protein.
Length = 185
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 396 TPMDLELYP*-VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPAS 220
TP +YP VC+ P PSYT P P +Q+ +S + ++ SSS AS
Sbjct: 100 TPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHY----YQESSSSSAS 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,480,074
Number of Sequences: 27780
Number of extensions: 369867
Number of successful extensions: 1375
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -