BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0940 (755 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 31 0.67 Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 31 0.67 AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical... 30 2.0 Z69885-3|CAA93755.1| 278|Caenorhabditis elegans Hypothetical pr... 29 3.6 U13072-7|AAK31398.2| 382|Caenorhabditis elegans Nematode astaci... 29 4.7 U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical pr... 28 6.2 Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 28 8.2 Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 28 8.2 U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 28 8.2 >Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein F22G12.5 protein. Length = 2396 Score = 31.5 bits (68), Expect = 0.67 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Frame = -3 Query: 324 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 163 L LPPT N + C+ L ++ SSS P +V + TV ++TRL G Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679 Query: 162 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 16 + T KP L + S S S L +S ST + W S+SGA Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724 >Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein F22G12.5 protein. Length = 2396 Score = 31.5 bits (68), Expect = 0.67 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Frame = -3 Query: 324 LPLPPTR-NEGPMSQYCKASMWL-----VWIFRTSSSQPASVLQKGVTVCWTMTRLTGRA 163 L LPPT N + C+ L ++ SSS P +V + TV ++TRL G Sbjct: 620 LQLPPTTVNHRDLWIVCRVDRILSADTAAELYMKSSSDPKAVAKLQKTVSMSLTRLAGHR 679 Query: 162 RYDTCTGIKPSHCFLLTTSQSAAISVRSE-LRASASTTAEWRRAMSRSGA 16 + T KP L + S S S L +S ST + W S+SGA Sbjct: 680 QRFAWTA-KPLFPELRSNHSSTISSTTSPMLSSSTSTLSGW----SKSGA 724 >AC024810-19|AAF60770.1| 427|Caenorhabditis elegans Hypothetical protein Y54E10A.16a protein. Length = 427 Score = 29.9 bits (64), Expect = 2.0 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = -2 Query: 220 RPAEGCDCVLDDDEAHGPRQVRHVHRDQTVPLLFTDDVAIGCYFCEKRAESEREYNCRVE 41 RP G +LD+ E GP +V +V+ D + D +G F + CRV+ Sbjct: 97 RPDRGKFTILDNAEVAGPEEVLNVNFDSEILQRIFSDPKLGIQFLARYGLIPNTRVCRVQ 156 >Z69885-3|CAA93755.1| 278|Caenorhabditis elegans Hypothetical protein T04C10.3 protein. Length = 278 Score = 29.1 bits (62), Expect = 3.6 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -1 Query: 641 RYAVIMLRVLDGVHVLQPLRASVVSGCRASGR 546 R ++LRVLDG L+ LR S +G R+ G+ Sbjct: 51 RVEALILRVLDGQSKLETLRDSYQTGLRSHGK 82 >U13072-7|AAK31398.2| 382|Caenorhabditis elegans Nematode astacin protease protein 7 protein. Length = 382 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = -3 Query: 240 SSSQPASVLQKGVTVC-WTMTRLTGRARYDTCTGIKPSHC 124 +S++P+S + +TVC WT R A Y + + P C Sbjct: 340 NSNKPSSQCEDRITVCWWTADRCRSPAIYQVMSSLCPKTC 379 >U88170-4|AAB42245.2| 425|Caenorhabditis elegans Hypothetical protein C10G11.6 protein. Length = 425 Score = 28.3 bits (60), Expect = 6.2 Identities = 16/55 (29%), Positives = 29/55 (52%) Frame = -3 Query: 366 VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPASVLQKGV 202 + +P +P PS ++PLPP + P S Y ++ + ++S+S S L K + Sbjct: 172 IVSPDVRRPPPSLSIPLPP-MHIPPPSVYFISTPSIYSTAKSSTSTVTSKLSKAI 225 >Z68338-5|CAA92758.1| 203|Caenorhabditis elegans Hypothetical protein T24B8.6 protein. Length = 203 Score = 27.9 bits (59), Expect = 8.2 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = -3 Query: 396 TPMDLELYP*-VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPAS 220 TP +YP VC+ P PSYT P P +Q+ +S + ++ SSS AS Sbjct: 133 TPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHY----YQESSSSSAS 188 >Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical protein C09G5.6 protein. Length = 948 Score = 27.9 bits (59), Expect = 8.2 Identities = 20/56 (35%), Positives = 24/56 (42%) Frame = +1 Query: 94 SSRLRRRQ*KAMGRFDPGARVVPGAAREPRHRPAHSHTLLQDGRWLRGARAEYPDQ 261 SSR R+ + M R G R P AA +RP H GR +R YP Q Sbjct: 123 SSRPRKPEPPTMPRTIQGFRAPPPAATST-YRPPHGSNYDNYGREPASSRRPYPPQ 177 >U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loop-helix DNA bindingprotein HLH-3 protein. Length = 185 Score = 27.9 bits (59), Expect = 8.2 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = -3 Query: 396 TPMDLELYP*-VCAPTCSQPEPSYTLPLPPTRNEGPMSQYCKASMWLVWIFRTSSSQPAS 220 TP +YP VC+ P PSYT P P +Q+ +S + ++ SSS AS Sbjct: 100 TPEQSPVYPQSVCSMMAQTPSPSYTSPYYPPPQMMSSNQHDMSSHY----YQESSSSSAS 155 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,480,074 Number of Sequences: 27780 Number of extensions: 369867 Number of successful extensions: 1375 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1272 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1375 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1798543458 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -