Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0939
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   5.7  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   5.7  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   9.9  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 140  LHEQR*PLSIRWVVCSSVYKGNKK--TDVAFSEAL 238
            +HE+R PL+I ++  +++Y+ N+   T + FS  L
Sbjct: 1836 VHEKRSPLAISYLDAANMYRSNEDEGTKMMFSNTL 1870


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 303 CLLCTCISTSC 335
           C+LC C STSC
Sbjct: 165 CILCACCSTSC 175


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -1

Query: 235 SFTKGYVSFFIALVNRRAYDPPDAEWLPLLM-EDNNARGRTKP 110
           SF+K   SF + L +  A    D E +PL+  ED NAR  T+P
Sbjct: 503 SFSKALKSF-VGLFSYSASKTTDTE-IPLVKNEDENARKPTEP 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,854
Number of Sequences: 5004
Number of extensions: 56292
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)