BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0939 (673 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 5.7 SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 26 5.7 SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.9 >SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces pombe|chr 3|||Manual Length = 2812 Score = 25.8 bits (54), Expect = 5.7 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Frame = +2 Query: 140 LHEQR*PLSIRWVVCSSVYKGNKK--TDVAFSEAL 238 +HE+R PL+I ++ +++Y+ N+ T + FS L Sbjct: 1836 VHEKRSPLAISYLDAANMYRSNEDEGTKMMFSNTL 1870 >SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 252 Score = 25.8 bits (54), Expect = 5.7 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = +3 Query: 303 CLLCTCISTSC 335 C+LC C STSC Sbjct: 165 CILCACCSTSC 175 >SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual Length = 723 Score = 25.0 bits (52), Expect = 9.9 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Frame = -1 Query: 235 SFTKGYVSFFIALVNRRAYDPPDAEWLPLLM-EDNNARGRTKP 110 SF+K SF + L + A D E +PL+ ED NAR T+P Sbjct: 503 SFSKALKSF-VGLFSYSASKTTDTE-IPLVKNEDENARKPTEP 543 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,693,854 Number of Sequences: 5004 Number of extensions: 56292 Number of successful extensions: 132 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 132 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 307866294 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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