Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0939
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1047 + 25666113-25666442,25666606-25666651,25667042-256671...    33   0.21 
12_02_0492 + 19668896-19669893,19670886-19670972,19671067-19671097     29   3.4  
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898...    29   3.4  
01_05_0035 + 17440828-17441364                                         28   5.9  

>12_02_1047 +
           25666113-25666442,25666606-25666651,25667042-25667130,
           25667291-25667493,25667807-25667949,25668286-25668332,
           25668794-25668870,25668952-25668981,25669068-25669163,
           25669489-25669591,25669959-25670041,25670204-25670326,
           25670465-25670576,25670791-25670898,25671006-25671593
          Length = 725

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = -1

Query: 397 KDISP*YSLSTYFWYSIPSGRHEVDIHVHSRQKVHFTLSYYILYIRSFVFVVKESFTKGY 218
           K+  P  S+S   W  +PS   +  + V  ++  +    + + YI  F+ +  E FT+  
Sbjct: 468 KNPPPDISISETIWDDLPSNIQKEKVQVPQQKNEYDCGIFMLYYIERFIRLAPERFTRDN 527

Query: 217 VSFFIALVNRRAYDPPDA 164
           +S F    +R  + P DA
Sbjct: 528 LSMF----SRSWFQPEDA 541


>12_02_0492 + 19668896-19669893,19670886-19670972,19671067-19671097
          Length = 371

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 440 RAVSKNEHHHCYKVNDSCLSGGKLFLRIGVQFPLQEIPSLF 562
           RAV   E  H Y   DSCL   K  L  G   P  ++ SL+
Sbjct: 274 RAVFSEEDDHIYFFRDSCLYAYKFSLEEGKMAPPIKLASLY 314


>03_02_0505 +
           8981856-8982879,8983014-8983129,8985407-8985994,
           8986091-8986192
          Length = 609

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 340 GRHEVDIHVHSRQKVHFTLSYY 275
           G H+V+IH HS    HFT  +Y
Sbjct: 295 GFHQVNIHPHSNYFFHFTTKHY 316


>01_05_0035 + 17440828-17441364
          Length = 178

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 292 FTLSYYILYIRSFVFVVKESFTKGYVSFFIALVNRRAYD 176
           FT+   +  +R+FV +V ESF   +V   +A   RR +D
Sbjct: 78  FTVHLLVHDVRTFVLLVAESFCIFFVMSGVAACERRQHD 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,495
Number of Sequences: 37544
Number of extensions: 316659
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)