BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0939 (673 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026) 29 2.6 SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41) 29 3.4 SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9 >SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026) Length = 522 Score = 29.5 bits (63), Expect = 2.6 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Frame = -1 Query: 376 SLSTYFWYSIPSGRHEVDIHVHSRQKVHFTLSYYILYIRSFVFVVKESFTKGY---VSFF 206 S YF + + SG + ++ H S IL R + F Y VSFF Sbjct: 40 SADLYFDFMLISGLYREPLN-HETYSSRPPTSELILKFRQNTMIQDLGFFINYGSPVSFF 98 Query: 205 IALVNRRAYDPPDAEWLP-LLMEDNNARGRTK 113 + + R +DPP + P L + + RGR K Sbjct: 99 TQMTSLRNHDPPPPKRFPSWLSKVSTIRGRRK 130 >SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41) Length = 687 Score = 29.1 bits (62), Expect = 3.4 Identities = 11/42 (26%), Positives = 21/42 (50%) Frame = -1 Query: 298 VHFTLSYYILYIRSFVFVVKESFTKGYVSFFIALVNRRAYDP 173 + FT ++Y+ ++ S + +V SF F+ N+ DP Sbjct: 264 IKFTYNFYLCWLISHIVLVDSSFADSVKKVFMGEANKELVDP 305 >SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 522 Score = 27.9 bits (59), Expect = 7.9 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -1 Query: 373 LSTYFWYSIPSGRHEVDIHVHSRQKVHFTLSYYILYIRSFVF-VVKESFTKGYVSFFIAL 197 +ST F Y++ S + + + K H + +Y L + V VV + +KG+VS ++ Sbjct: 428 VSTIF-YTLQSQENVEGVVTLAVSKGHVSTIFYTLQSQKNVEGVVTVAVSKGHVSQVTSM 486 Query: 196 VNRRAYDPPDA 164 + YDP DA Sbjct: 487 DEKGDYDPGDA 497 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,238,805 Number of Sequences: 59808 Number of extensions: 397363 Number of successful extensions: 721 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 690 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 721 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1721264831 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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