Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0939
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)                 29   2.6  
SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41)              29   3.4  
SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_36258| Best HMM Match : LRR_1 (HMM E-Value=0.00026)
          Length = 522

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
 Frame = -1

Query: 376 SLSTYFWYSIPSGRHEVDIHVHSRQKVHFTLSYYILYIRSFVFVVKESFTKGY---VSFF 206
           S   YF + + SG +   ++ H         S  IL  R    +    F   Y   VSFF
Sbjct: 40  SADLYFDFMLISGLYREPLN-HETYSSRPPTSELILKFRQNTMIQDLGFFINYGSPVSFF 98

Query: 205 IALVNRRAYDPPDAEWLP-LLMEDNNARGRTK 113
             + + R +DPP  +  P  L + +  RGR K
Sbjct: 99  TQMTSLRNHDPPPPKRFPSWLSKVSTIRGRRK 130


>SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41)
          Length = 687

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -1

Query: 298 VHFTLSYYILYIRSFVFVVKESFTKGYVSFFIALVNRRAYDP 173
           + FT ++Y+ ++ S + +V  SF       F+   N+   DP
Sbjct: 264 IKFTYNFYLCWLISHIVLVDSSFADSVKKVFMGEANKELVDP 305


>SB_43404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -1

Query: 373 LSTYFWYSIPSGRHEVDIHVHSRQKVHFTLSYYILYIRSFVF-VVKESFTKGYVSFFIAL 197
           +ST F Y++ S  +   +   +  K H +  +Y L  +  V  VV  + +KG+VS   ++
Sbjct: 428 VSTIF-YTLQSQENVEGVVTLAVSKGHVSTIFYTLQSQKNVEGVVTVAVSKGHVSQVTSM 486

Query: 196 VNRRAYDPPDA 164
             +  YDP DA
Sbjct: 487 DEKGDYDPGDA 497


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,238,805
Number of Sequences: 59808
Number of extensions: 397363
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)