Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0939
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    30   1.3  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    30   1.3  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    30   1.3  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    30   1.3  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    30   1.3  
U50301-8|AAB37049.1|  339|Caenorhabditis elegans Serpin protein ...    29   2.3  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ...    29   4.0  
Z92822-9|CAL49448.1|  576|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z82094-5|CAL49446.1|  576|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    27   9.2  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      27   9.2  

>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 364  YFWYSIPSGRHEVDIHVHSRQKVHFTLSYYILYIRSFVFVVKESFTK 224
            +F+ ++PS + +VD+ V  + K  +T  Y ++ +R F    + S  K
Sbjct: 1282 HFFVALPSSKIDVDVQVELK-KFTYTFGYLVVILRFFTIASRNSTLK 1327


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 364  YFWYSIPSGRHEVDIHVHSRQKVHFTLSYYILYIRSFVFVVKESFTK 224
            +F+ ++PS + +VD+ V  + K  +T  Y ++ +R F    + S  K
Sbjct: 1316 HFFVALPSSKIDVDVQVELK-KFTYTFGYLVVILRFFTIASRNSTLK 1361


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            a protein.
          Length = 1562

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 364  YFWYSIPSGRHEVDIHVHSRQKVHFTLSYYILYIRSFVFVVKESFTK 224
            +F+ ++PS + +VD+ V  + K  +T  Y ++ +R F    + S  K
Sbjct: 1374 HFFVALPSSKIDVDVQVELK-KFTYTFGYLVVILRFFTIASRNSTLK 1419


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            c protein.
          Length = 1913

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 364  YFWYSIPSGRHEVDIHVHSRQKVHFTLSYYILYIRSFVFVVKESFTK 224
            +F+ ++PS + +VD+ V  + K  +T  Y ++ +R F    + S  K
Sbjct: 1427 HFFVALPSSKIDVDVQVELK-KFTYTFGYLVVILRFFTIASRNSTLK 1472


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 1, isoform
            d protein.
          Length = 1861

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 364  YFWYSIPSGRHEVDIHVHSRQKVHFTLSYYILYIRSFVFVVKESFTK 224
            +F+ ++PS + +VD+ V  + K  +T  Y ++ +R F    + S  K
Sbjct: 1346 HFFVALPSSKIDVDVQVELK-KFTYTFGYLVVILRFFTIASRNSTLK 1391


>U50301-8|AAB37049.1|  339|Caenorhabditis elegans Serpin protein 8
           protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 408 YLSYYNRINELELFLKMNTIIVTKLMIVVYPGENCFYASVFNFLYK 545
           Y+  +     +  F+    I VTK  ++++P  + F+AS  +F YK
Sbjct: 293 YIGNFAENVHISEFIHKAIIEVTKRFLIIFPISSSFFASFKDFFYK 338


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
           protein F54D1.5 protein.
          Length = 1406

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 528 TPMRKNNFPPDKQLSLTL 475
           T ++K N PPD+QL+LTL
Sbjct: 460 TVLQKQNLPPDEQLALTL 477


>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1122

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -2

Query: 528 TPMRKNNFPPDKQLSLTL 475
           T ++K N PPD+QL+LTL
Sbjct: 176 TVLQKQNLPPDEQLALTL 193


>Z92822-9|CAL49448.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK520.3b protein.
          Length = 576

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 351 EYQK*VEREYQGLISFSCQYLSYYNRINELELFLKMNT 464
           EY K +E+   G IS + +   YYNR+N++ +  K  T
Sbjct: 233 EYAKAIEQH--GNISQALELAEYYNRVNDMFMAAKFYT 268


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical protein
            ZK520.3a protein.
          Length = 1383

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 351  EYQK*VEREYQGLISFSCQYLSYYNRINELELFLKMNT 464
            EY K +E+   G IS + +   YYNR+N++ +  K  T
Sbjct: 1040 EYAKAIEQH--GNISQALELAEYYNRVNDMFMAAKFYT 1075


>Z82094-5|CAL49446.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK520.3b protein.
          Length = 576

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 351 EYQK*VEREYQGLISFSCQYLSYYNRINELELFLKMNT 464
           EY K +E+   G IS + +   YYNR+N++ +  K  T
Sbjct: 233 EYAKAIEQH--GNISQALELAEYYNRVNDMFMAAKFYT 268


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical protein
            ZK520.3a protein.
          Length = 1383

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 351  EYQK*VEREYQGLISFSCQYLSYYNRINELELFLKMNT 464
            EY K +E+   G IS + +   YYNR+N++ +  K  T
Sbjct: 1040 EYAKAIEQH--GNISQALELAEYYNRVNDMFMAAKFYT 1075


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 351  EYQK*VEREYQGLISFSCQYLSYYNRINELELFLKMNT 464
            EY K +E+   G IS + +   YYNR+N++ +  K  T
Sbjct: 1040 EYAKAIEQH--GNISQALELAEYYNRVNDMFMAAKFYT 1075


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,663,991
Number of Sequences: 27780
Number of extensions: 306850
Number of successful extensions: 671
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)