Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0939
(673 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 23 2.0
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 23 2.6
AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor prot... 23 2.6
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 3.5
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 4.6
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 22 4.6
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 22 6.1
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 21 8.1
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 8.1
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 8.1
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 8.1
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 21 8.1
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 21 8.1
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 21 8.1
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 21 8.1
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 8.1
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 8.1
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 23.4 bits (48), Expect = 2.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 279 YDKVKCTFCLLCTCISTSCRPLGI--EYQK*VERE 377
Y + KC C L C++ RP + EYQ V+R+
Sbjct: 234 YMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRK 268
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.0 bits (47), Expect = 2.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 628 IYTNNNCKYSFPDNQKYIISHN 563
I+ NNN KY++ N KY ++N
Sbjct: 90 IHNNNNYKYNY--NNKYNYNNN 109
>AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor
protein.
Length = 72
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +3
Query: 279 YDKVKCTFCLLCTCISTSCRP--LGIEYQK*VERE 377
Y + KC C L C++ RP + EYQ V+R+
Sbjct: 31 YMRRKCQECRLKKCLTVGMRPECMVPEYQCAVKRK 65
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.6 bits (46), Expect = 3.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 175 PPDAEWLPLLMEDNNARG 122
PPD W P ++ NNA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 4.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 628 IYTNNNCKYSFPDNQK 581
I+ NNN KY++ +N K
Sbjct: 90 IHNNNNYKYNYNNNCK 105
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 22.2 bits (45), Expect = 4.6
Identities = 6/9 (66%), Positives = 9/9 (100%)
Frame = -2
Query: 336 GTKWIYTCI 310
GT+WI++CI
Sbjct: 63 GTRWIFSCI 71
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 21.8 bits (44), Expect = 6.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 524 RCVKTIFPRINNYH*LCNNDGVH 456
RCVK I + YH L N+ ++
Sbjct: 610 RCVKGILLKSGLYHVLRGNENIY 632
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 343 SGRHEVDIHVHSRQKVHFTLSYYI 272
+GRH D+ +QK F L Y+
Sbjct: 23 AGRHTADMDFLHKQKKIFDLLLYV 46
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 343 SGRHEVDIHVHSRQKVHFTLSYYI 272
+GRH D+ +QK F L Y+
Sbjct: 23 AGRHTADMDFLHKQKKIFDLLLYV 46
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 619 NNNCKYSFPDNQKYIISHNEK*RY 548
NNN KY++ +N ++N+K Y
Sbjct: 91 NNNYKYNYNNNNYNNNNYNKKLYY 114
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 8.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 619 NNNCKYSFPDNQKYIISHNEK*RY 548
NNN KY++ +N ++N+K Y
Sbjct: 91 NNNYKYNYNNNNYNNNNYNKKLYY 114
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.4 bits (43), Expect = 8.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 628 IYTNNNCKYSFPDN 587
I+ NNN KY++ +N
Sbjct: 90 IHNNNNYKYNYNNN 103
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 8.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 628 IYTNNNCKYSFPDN 587
I+ NNN KY++ +N
Sbjct: 90 IHNNNNYKYNYNNN 103
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 8.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 628 IYTNNNCKYSFPDN 587
I+ NNN KY++ +N
Sbjct: 90 IHNNNNYKYNYNNN 103
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.4 bits (43), Expect = 8.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 628 IYTNNNCKYSFPDN 587
I+ NNN KY++ +N
Sbjct: 90 IHNNNNYKYNYNNN 103
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.4 bits (43), Expect = 8.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 625 YTNNNCKYSFPDNQKYIISHN 563
Y NNN KY++ + K + N
Sbjct: 324 YNNNNYKYNYNNYNKKLYYKN 344
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.4 bits (43), Expect = 8.1
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1
Query: 628 IYTNNNCKYSFPDN 587
I+ NNN KY++ +N
Sbjct: 323 IHNNNNYKYNYNNN 336
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,432
Number of Sequences: 438
Number of extensions: 4394
Number of successful extensions: 23
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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