Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0938
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    28   1.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    28   1.2  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   5.0  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|...    26   5.0  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   8.7  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    25   8.7  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   8.7  

>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 255 YAINI-YTKHSSEAISQEEFQRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCISSEIFD 431
           Y I I Y ++ S   ++E F +  + D   +   EI+    I   Y  QH    S E+F 
Sbjct: 442 YGIGILYDRYGSHEHAEEAFMQCLRMDPNFEKVNEIYFRLGII--YKQQHKFAQSLELFR 499

Query: 432 NFIDN 446
           + +DN
Sbjct: 500 HILDN 504


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +3

Query: 396  QHSLC----ISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRNYIEVWA 563
            QH+LC    ISS   DNF+  L D  Q   +  L +L    N  P T+ +   N ++   
Sbjct: 969  QHTLCTIDCISSAKIDNFLTKLVDLKQPGLNKLLDSLLSLSN--PSTSLLTDENTVDDNK 1026

Query: 564  ALDDECLKRLKNWSHDEMLSFISL 635
                E L  +++    ++L+ + L
Sbjct: 1027 VSSVEALSNIQSAIVADLLTSLFL 1050


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 93  RKLLITSIFRLQCVSQFKLKPGYTRSIHSST-GLFIKMYMEKENEYAYSVLENKGYAINI 269
           + L + S   +  V      P  + + H+S     +  Y++ EN++ + V  N+   IN+
Sbjct: 175 KNLALASSHNIHIVDLNHRNPIDSLTTHTSMINSVVFQYLKDENKFYFGVSANQDRFINL 234

Query: 270 YTK 278
           Y+K
Sbjct: 235 YSK 237


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 246 NKGYAINIYTKHSSEAISQEEFQRLNKED 332
           NKGYA +I + HS+   S E+F+++   D
Sbjct: 412 NKGYAYSITSSHSNH--SNEKFEQIPSPD 438


>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 174

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 162 TRSIHSSTGLFIKMYMEKENEYAYSVLENKGYAINIYTKHSSEAISQEEFQRLNK 326
           T++IHS   L +    E  + +    +  K   I +  K  S+   +EEF+RL+K
Sbjct: 70  TKTIHSEVILSLSPKTEISSAFRQFSMTKKSKNI-VVVKIDSKLTEEEEFERLDK 123


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 303  EEFQRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCISSE 422
            EE     +E W   + + IF IF IFG    + ++ +  E
Sbjct: 1435 EESDDFTEETWEVVSRKFIFPIFSIFGPEADEATVMLRDE 1474


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 558 WAALDDECLKRLKNWSHDEMLSFI 629
           W   D   L  +K W HDE+L  +
Sbjct: 240 WVDADSWMLPVMKTWPHDEILEIL 263


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 10/137 (7%)
 Frame = +3

Query: 195 IKMYMEKENEYAYSVLENKGYAINIY-TKHSSEAISQEEFQ--RLNKEDWTKKTTQEIFE 365
           I ++++ +     S L    Y  +++ T H   AIS    Q   +N     K    +  E
Sbjct: 220 IGLFVDSQGNVTRSTLTFSFYPKHVFSTSHYVFAISSSSLQIIDINTLSLVKSINLKDDE 279

Query: 366 IFPIFGKYCSQHSLCISSEIFDNF-------IDNLTDTIQMATDSQLKTLFYSLNMWPET 524
            F    +  S H  C   +IF  F           +DTI+ A+ S+   +F +   W   
Sbjct: 280 SFSFISRLTSVH-FC-DRQIFSKFSAVNTASTSKTSDTIERASFSKPSFIFLTNKSWGFG 337

Query: 525 ASIRTRNYIEVWAALDD 575
           A     N +E    + D
Sbjct: 338 AEAHFMNKLEFSITIGD 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,034,763
Number of Sequences: 5004
Number of extensions: 63929
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)