Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0938
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_02_0019 + 11877119-11879984,11880316-11880389,11881293-118815...    31   0.74 
09_02_0384 - 8294914-8297817                                           30   1.7  
10_08_0119 - 14952786-14953931,14954709-14954831                       30   2.2  
11_06_0220 - 21374816-21376849                                         29   3.9  
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856     29   5.2  
07_01_0008 - 56178-57095                                               28   6.9  
06_01_0787 - 5889596-5890389,5890849-5891230                           28   6.9  

>07_02_0019 +
           11877119-11879984,11880316-11880389,11881293-11881511,
           11881557-11881679,11881759-11881859,11881938-11881990,
           11882084-11882269,11882677-11882894
          Length = 1279

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
 Frame = +3

Query: 234 SVLENKGYAINIYTK----HS-SEAISQEEFQRLNKEDWTKKTTQEIFEIFPIFGKYCSQ 398
           S +EN G + N+YT     H   ++   E+   L +E  TK      F   P+   YC +
Sbjct: 443 SEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCRE 502

Query: 399 HSLCISSEIFD 431
            ++ ++ EIFD
Sbjct: 503 GNVSLACEIFD 513


>09_02_0384 - 8294914-8297817
          Length = 967

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = +3

Query: 438 IDNLTDTIQMATDS----QLKTLFYSLNMWPETASIRTRNYIEVWAALDDECLKRLKNWS 605
           I+ +  T++++ D+    QLK  F    +WPE  SI T + +  W  L    + R  N S
Sbjct: 382 INPILSTLRISYDNLENDQLKECFLVCLLWPEGYSIWTVDLVNCWIGLGLVPVGRTINDS 441

Query: 606 HDEMLSFI 629
           H+  LS I
Sbjct: 442 HNIGLSRI 449


>10_08_0119 - 14952786-14953931,14954709-14954831
          Length = 422

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = +3

Query: 363 EIFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMAT-DSQL-KTL--FYSLNMWPETAS 530
           E F       +  S    +E+F    +  TD I++   D+Q+ K L  F   + WPE   
Sbjct: 258 ETFAAHRLVLAARSPVFKAELFKPMEEGTTDVIKIDNMDAQVFKALLVFIYTDTWPEIGQ 317

Query: 531 IRTRNYIEVWAALDDECLKRLKNWSHDEMLSFI 629
             T    ++  A +   L RLK    D++ S+I
Sbjct: 318 DETTMVQQLLVAANKYSLSRLKIMCEDKLCSYI 350


>11_06_0220 - 21374816-21376849
          Length = 677

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 169 LFIVVLGYSLKCIWKKRMNMHTVC*KIKVMQ*IFIQNILAKLYLK 303
           L  +V GY+    W+ R  MHT+  K+     +F+ N L  LY++
Sbjct: 224 LVTLVSGYAGFGSWEGRGMMHTIVIKLGFQLNLFVSNALLDLYVE 268


>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
          Length = 1494

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = +3

Query: 411  ISSEIFDN-FIDNLTDTIQMATDS---QLKTLFYSLNMWPETASIRTRNYIEVWAA 566
            + SEI  N  +D L   ++++ +     LKT F  L+++PE  +IR +  +  W A
Sbjct: 942  LGSEIETNPSLDRLKKILELSYNDLPYHLKTCFLYLSIYPEDHNIRRKTILRRWVA 997


>07_01_0008 - 56178-57095
          Length = 305

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 573 HQVQPIPQYSFLF*SMLFLATCLRNKKEFLIVSQ*PFVWYQL 448
           H+ QP P + + + S+LF A C      FL+     FVWY L
Sbjct: 222 HRPQPHPHHYYPWLSLLFAAACGAMLTFFLL-----FVWYSL 258


>06_01_0787 - 5889596-5890389,5890849-5891230
          Length = 391

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 513 WPETASIRTRNYIEVWAALDD 575
           +PET  +RTR ++E W  + D
Sbjct: 85  YPETPGVRTREHVEAWKPIVD 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,108
Number of Sequences: 37544
Number of extensions: 305544
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)