Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0938
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47383| Best HMM Match : LON (HMM E-Value=1.3)                       30   1.7  
SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)           29   5.3  
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)                     28   7.0  
SB_50274| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_47383| Best HMM Match : LON (HMM E-Value=1.3)
          Length = 1528

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 531  IRTRNYIEVWAALDDECLKRLKNWSHDEMLSFISLFFM 644
            IR  N +     L +E +KR++++ H   L+F  LFFM
Sbjct: 1164 IRRTNLLLELVQLKEELIKRVRDYIHQTRLAFPRLFFM 1201


>SB_58599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 616

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
 Frame = +3

Query: 165 RSIHSSTGLFIKMYMEKENEYAYSVLENKGYAINIYTKHSSEAISQEEF--QRLNKEDWT 338
           R I  ++  FIK  + +E + A    E  GY  N+  K ++    + +F  + L+   + 
Sbjct: 60  REIQKNSSDFIKRGI-REEDIAKHYNECPGYGRNVVLKFATFFQERIDFAQEMLDGNSFI 118

Query: 339 KK--TTQEIFEIFPIFGKYCSQHSL-CISSEIFDNF 437
           +   T QEI  +    GKY +QH+  C  ++IF+++
Sbjct: 119 RDFGTRQEIVSLDDAEGKYSTQHARGCHFNQIFEDW 154


>SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 317 SLKLFLRYSFARMFCINIYCITFIF*HTV--CIFILF 213
           SL +F+    AR+F I  YC  F+F   V  C+F+++
Sbjct: 227 SLFVFITIVHARLFMIYAYCSLFVFITIVHACLFMIY 263


>SB_20707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 16/181 (8%)
 Frame = +3

Query: 120 RLQCVSQFKLKPGYTRSIHSSTGLFIKMYMEKENEYAYSVLENKGYAI------NIYT-K 278
           R++  +Q + +  Y R    S G +  +  + E   A +V  N           + YT K
Sbjct: 261 RIKTNTQIQSQVQYQRDFEQSRGRYTVISDDPETLRAINVNRNSSNVAYQNGSRDQYTDK 320

Query: 279 HSSEAISQEEF--QRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCISS--EIF---DNF 437
            +SE + ++E   + L  ED   KT +  F + P   +Y + ++   S   EI     + 
Sbjct: 321 SNSETVREKETITKVLEYEDLWLKTNRVSFALSPQEERYVAAYNYTASDTDEIGLQEGDI 380

Query: 438 IDNLT--DTIQMATDSQLKTLFYSLNMWPETASIRTRNYIEVWAALDDECLKRLKNWSHD 611
           I N T  D   M  DS L  L    N W    S+ T   I +   L D+ +  + NW H+
Sbjct: 381 ITNPTRIDEGWMEGDSPLIALPKQRN-W----SVCTGKSITLEVILQDDSMPFIVNWRHE 435

Query: 612 E 614
           E
Sbjct: 436 E 436


>SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)
          Length = 525

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 276 KHSSEAISQEEFQRLNKEDWTKKTTQEIFEIFPIFGKY 389
           K   E   Q+E  R   E+  K+  QE++ I P+ G+Y
Sbjct: 388 KREEERRRQKEEDRRRYEEMEKRRLQEVWRIPPLHGRY 425


>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 577

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 531 IRTRNYIEVWAALDDECLKRLKNWSHDEMLSFISLFF 641
           ++T N I +W  L+D  ++R   WS    +SF S  +
Sbjct: 351 MKTVNGIWIWTGLNDRSVERGYEWSDGSPVSFTSWLY 387


>SB_50274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +3

Query: 396 QH-SLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMW 515
           QH  +C+SS++FD  +D++T +    +  Q+  +F  LN +
Sbjct: 185 QHPEVCVSSDLFDTCVDDVTQSYGSLSFGQVFVMF-DLNQY 224


>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
 Frame = +3

Query: 489 TLFYSLNMWPETASIRTRNYIEVWA------ALDDECLKRLKNWSHDEMLSFISLFFMLN 650
           T+F + +++ E AS RT N  E +          D   +R K W+ D  LS+++L  ML 
Sbjct: 756 TIFPNQSIYVE-ASARTYNKSEYFVDNGATFVCTDLPPRREKTWADDPALSWLTLMCMLL 814

Query: 651 VTRSK*FFLEKYK*ISNLK 707
                 FFL  Y   S L+
Sbjct: 815 SIAGLVFFLVTYLLFSELR 833


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,732,071
Number of Sequences: 59808
Number of extensions: 394365
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)