Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0938
(746 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY260057-1|AAO85037.1| 629|Drosophila melanogaster CG2124 protein. 66 5e-11
AY260056-1|AAO85035.1| 629|Drosophila melanogaster CG2124 protein. 66 5e-11
AY260055-1|AAO85033.1| 629|Drosophila melanogaster CG2124 protein. 66 5e-11
AY071525-1|AAL49147.1| 629|Drosophila melanogaster RE57138p pro... 66 5e-11
AE014298-1471|AAF46606.1| 629|Drosophila melanogaster CG2124-PA... 66 5e-11
X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein ... 33 0.31
X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein ... 33 0.31
AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-P... 33 0.31
AE014297-2908|AAF55834.2| 4496|Drosophila melanogaster CG3723-PA... 30 3.9
>AY260057-1|AAO85037.1| 629|Drosophila melanogaster CG2124 protein.
Length = 629
Score = 66.1 bits (154), Expect = 5e-11
Identities = 46/187 (24%), Positives = 93/187 (49%), Gaps = 4/187 (2%)
Frame = +3
Query: 198 KMYMEKENEYAYSVLEN--KGYAINIYTKHSS--EAISQEEFQRLNKEDWTKKTTQEIFE 365
+++ ++EN++A+ +L + K YAI + + S+ + + E F R + + +++
Sbjct: 28 RIFADRENQFAHGILMDSLKPYAI-LRPRDSAWQDLPASEGFMRPQPD----ASAADLYA 82
Query: 366 IFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRN 545
F ++C++ L IS ++ F + + TD QL +L P S + +N
Sbjct: 83 DFLGLVRHCNRMELKISDSRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKN 142
Query: 546 YIEVWAALDDECLKRLKNWSHDEMLSFISLFFMLNVTRSK*FFLEKYK*ISNLKPNQLTP 725
Y+E+W LD EC +R++ WS +++L ++ L + R + K + K +L P
Sbjct: 143 YMEIWNTLDIECCRRIERWSSEQLLLVSDAWYRLGLVRIGEYVWLALKKLGR-KLRKLPP 201
Query: 726 GQLVQTL 746
QLV ++
Sbjct: 202 EQLVHSM 208
>AY260056-1|AAO85035.1| 629|Drosophila melanogaster CG2124 protein.
Length = 629
Score = 66.1 bits (154), Expect = 5e-11
Identities = 46/187 (24%), Positives = 93/187 (49%), Gaps = 4/187 (2%)
Frame = +3
Query: 198 KMYMEKENEYAYSVLEN--KGYAINIYTKHSS--EAISQEEFQRLNKEDWTKKTTQEIFE 365
+++ ++EN++A+ +L + K YAI + + S+ + + E F R + + +++
Sbjct: 28 RIFADRENQFAHGILMDSLKPYAI-LRPRDSAWQDLPASEGFMRPQPD----ASAADLYA 82
Query: 366 IFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRN 545
F ++C++ L IS ++ F + + TD QL +L P S + +N
Sbjct: 83 DFLGLVRHCNRMELKISDSRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKN 142
Query: 546 YIEVWAALDDECLKRLKNWSHDEMLSFISLFFMLNVTRSK*FFLEKYK*ISNLKPNQLTP 725
Y+E+W LD EC +R++ WS +++L ++ L + R + K + K +L P
Sbjct: 143 YMEIWNTLDIECCRRIERWSSEQLLLVSDAWYRLGLVRIGEYVWLALKKLGR-KLRKLPP 201
Query: 726 GQLVQTL 746
QLV ++
Sbjct: 202 EQLVHSM 208
>AY260055-1|AAO85033.1| 629|Drosophila melanogaster CG2124 protein.
Length = 629
Score = 66.1 bits (154), Expect = 5e-11
Identities = 46/187 (24%), Positives = 93/187 (49%), Gaps = 4/187 (2%)
Frame = +3
Query: 198 KMYMEKENEYAYSVLEN--KGYAINIYTKHSS--EAISQEEFQRLNKEDWTKKTTQEIFE 365
+++ ++EN++A+ +L + K YAI + + S+ + + E F R + + +++
Sbjct: 28 RIFADRENQFAHGILMDSLKPYAI-LRPRDSAWQDLPASEGFMRPQPD----ASAADLYA 82
Query: 366 IFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRN 545
F ++C++ L IS ++ F + + TD QL +L P S + +N
Sbjct: 83 DFLGLVRHCNRMELKISDSRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKN 142
Query: 546 YIEVWAALDDECLKRLKNWSHDEMLSFISLFFMLNVTRSK*FFLEKYK*ISNLKPNQLTP 725
Y+E+W LD EC +R++ WS +++L ++ L + R + K + K +L P
Sbjct: 143 YMEIWNTLDIECCRRIERWSSEQLLLVSDAWYRLGLVRIGEYVWLALKKLGR-KLRKLPP 201
Query: 726 GQLVQTL 746
QLV ++
Sbjct: 202 EQLVHSM 208
>AY071525-1|AAL49147.1| 629|Drosophila melanogaster RE57138p
protein.
Length = 629
Score = 66.1 bits (154), Expect = 5e-11
Identities = 46/187 (24%), Positives = 93/187 (49%), Gaps = 4/187 (2%)
Frame = +3
Query: 198 KMYMEKENEYAYSVLEN--KGYAINIYTKHSS--EAISQEEFQRLNKEDWTKKTTQEIFE 365
+++ ++EN++A+ +L + K YAI + + S+ + + E F R + + +++
Sbjct: 28 RIFADRENQFAHGILMDSLKPYAI-LRPRDSAWQDLPASEGFMRPQPD----ASAADLYA 82
Query: 366 IFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRN 545
F ++C++ L IS ++ F + + TD QL +L P S + +N
Sbjct: 83 DFLGLVRHCNRMELKISDSRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKN 142
Query: 546 YIEVWAALDDECLKRLKNWSHDEMLSFISLFFMLNVTRSK*FFLEKYK*ISNLKPNQLTP 725
Y+E+W LD EC +R++ WS +++L ++ L + R + K + K +L P
Sbjct: 143 YMEIWNTLDIECCRRIERWSSEQLLLVSDAWYRLGLVRIGEYVWLALKKLGR-KLRKLPP 201
Query: 726 GQLVQTL 746
QLV ++
Sbjct: 202 EQLVHSM 208
>AE014298-1471|AAF46606.1| 629|Drosophila melanogaster CG2124-PA
protein.
Length = 629
Score = 66.1 bits (154), Expect = 5e-11
Identities = 46/187 (24%), Positives = 93/187 (49%), Gaps = 4/187 (2%)
Frame = +3
Query: 198 KMYMEKENEYAYSVLEN--KGYAINIYTKHSS--EAISQEEFQRLNKEDWTKKTTQEIFE 365
+++ ++EN++A+ +L + K YAI + + S+ + + E F R + + +++
Sbjct: 28 RIFADRENQFAHGILMDSLKPYAI-LRPRDSAWQDLPASEGFMRPQPD----ASAADLYA 82
Query: 366 IFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRN 545
F ++C++ L IS ++ F + + TD QL +L P S + +N
Sbjct: 83 DFLGLVRHCNRMELKISDSRYEAFTRCFCEQLHRLTDEQLLGSLSALAELPVPESPKAKN 142
Query: 546 YIEVWAALDDECLKRLKNWSHDEMLSFISLFFMLNVTRSK*FFLEKYK*ISNLKPNQLTP 725
Y+E+W LD EC +R++ WS +++L ++ L + R + K + K +L P
Sbjct: 143 YMEIWNTLDIECCRRIERWSSEQLLLVSDAWYRLGLVRIGEYVWLALKKLGR-KLRKLPP 201
Query: 726 GQLVQTL 746
QLV ++
Sbjct: 202 EQLVHSM 208
>X98082-1|CAA66706.1| 1332|Drosophila melanogaster RADHA protein
protein.
Length = 1332
Score = 33.5 bits (73), Expect = 0.31
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Frame = +3
Query: 243 ENKGYAINIYTKHSSEAISQEE--FQRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCIS 416
E+ YA++ S+E + ++ + + + + +F I K S+ L IS
Sbjct: 613 EDLSYALSEEHSSSNEKLDKKPGASKTMRPPEHVDTDLETDISVFSIQKKRKSKSKLVIS 672
Query: 417 SEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRNYIEVWAALDDECLKRLK 596
+E+ NF D+ TDT++ + K W E ++T+ IE L C L
Sbjct: 673 NELH-NFEDSSTDTLEKGRPNPSKGDLKLRARWVEVNKVQTQALIETEKFLQKTCPAELD 731
Query: 597 NWSHDEMLS 623
+++ ++
Sbjct: 732 EVLYEDQVA 740
>X98081-2|CAA66705.1| 1332|Drosophila melanogaster RADHA protein
protein.
Length = 1332
Score = 33.5 bits (73), Expect = 0.31
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Frame = +3
Query: 243 ENKGYAINIYTKHSSEAISQEE--FQRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCIS 416
E+ YA++ S+E + ++ + + + + +F I K S+ L IS
Sbjct: 613 EDLSYALSEEHSSSNEKLDKKPGASKTMRPPEHVDTDLETDISVFSIQKKRKSKSKLVIS 672
Query: 417 SEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRNYIEVWAALDDECLKRLK 596
+E+ NF D+ TDT++ + K W E ++T+ IE L C L
Sbjct: 673 NELH-NFEDSSTDTLEKGRPNPSKGDLKLRARWVEVNKVQTQALIETEKFLQKTCPAELD 731
Query: 597 NWSHDEMLS 623
+++ ++
Sbjct: 732 EVLYEDQVA 740
>AE014297-3789|AAF56461.1| 1332|Drosophila melanogaster CG11908-PA
protein.
Length = 1332
Score = 33.5 bits (73), Expect = 0.31
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Frame = +3
Query: 243 ENKGYAINIYTKHSSEAISQEE--FQRLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCIS 416
E+ YA++ S+E + ++ + + + + +F I K S+ L IS
Sbjct: 613 EDLSYALSEEHSSSNEKLDKKPGASKTMRPPEHVDTDLETDISVFSIQKKRKSKSKLVIS 672
Query: 417 SEIFDNFIDNLTDTIQMATDSQLKTLFYSLNMWPETASIRTRNYIEVWAALDDECLKRLK 596
+E+ NF D+ TDT++ + K W E ++T+ IE L C L
Sbjct: 673 NELH-NFEDSSTDTLEKGRPNPSKGDLKLRARWVEVNKVQTQALIETEKFLQKTCPAELD 731
Query: 597 NWSHDEMLS 623
+++ ++
Sbjct: 732 EVLYEDQVA 740
>AE014297-2908|AAF55834.2| 4496|Drosophila melanogaster CG3723-PA
protein.
Length = 4496
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 171 IHSSTGLFIKMYMEKENEYAYSVLENKGYAINIYTK---HSSEAISQEEFQRL 320
+H+S K+Y++ E Y Y+ ++ IN+Y K H +E + Q + +RL
Sbjct: 3027 VHTSVNTTSKVYLQNERRYNYTTPKSYLEQINLYIKLLNHKNEDL-QSKIERL 3078
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,682,130
Number of Sequences: 53049
Number of extensions: 570574
Number of successful extensions: 1406
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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