Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0938
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000262-7|AAN60523.1|  544|Caenorhabditis elegans Hypothetical ...    30   1.5  
U42436-1|AAF99891.1|  305|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U58746-4|AAB00624.1|  751|Caenorhabditis elegans Phospholipase c...    28   6.1  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epiderm...    28   8.1  
U23139-14|AAK31487.1|  301|Caenorhabditis elegans Hypothetical p...    28   8.1  

>AF000262-7|AAN60523.1|  544|Caenorhabditis elegans Hypothetical
           protein C48E7.2 protein.
          Length = 544

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 381 GKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTLFYSL 506
           GKY +Q  + I  +IF   +  + +TI +    QL TLFY L
Sbjct: 4   GKYETQMCVIIIEDIFGKIVAKVMETI-LKESCQLSTLFYKL 44


>U42436-1|AAF99891.1|  305|Caenorhabditis elegans Hypothetical
           protein C49H3.8 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 415 DMHKLCCEQYFPNIGNISKISWVVFLVQSSLF 320
           D+  LC E+ FPN G I  +  VVF   + +F
Sbjct: 145 DIETLCKERLFPNNGKIFVVPPVVFETSTEIF 176


>U58746-4|AAB00624.1|  751|Caenorhabditis elegans Phospholipase c
           protein 4 protein.
          Length = 751

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 135 SQFKLKPGYTRSIHSSTGLFIKMYMEKE 218
           SQ +L  GY  ++  S  LF+++ ME+E
Sbjct: 723 SQIQLNTGYQHTLDPSASLFVRIAMEEE 750


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
           protein C05C9.3 protein.
          Length = 1225

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +3

Query: 411 ISSEIFDNFIDNLTDTIQMATDS---QLKTLFYSLNMWPETASIRTRNYIEVWAALDDEC 581
           +  + + + ID L+D +Q+  +         FY+L M PE  ++ +R +  +  + DD  
Sbjct: 52  LDQDEYHDRIDYLSDPVQLNKNELPVDTPECFYNLTMIPEFCTMTSRQFFSMIQSADDRK 111

Query: 582 LK 587
            K
Sbjct: 112 FK 113


>U61955-2|AAM97993.1|  777|Caenorhabditis elegans Zygotic epidermal
           enclosure defectiveprotein 4, isoform c protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 204 YMEKENEYAYSVLENKGYAINIYTKHSSEAISQEEFQRLNKEDWTKKTTQEIFEIF 371
           Y+E  N Y Y +LE+      + TK       Q++      +D    +++E  E+F
Sbjct: 213 YVEIYNNYCYDLLEDARNGSRVLTKREIRHDRQQQMYVDGAKDVEVSSSEEALEVF 268


>U23139-14|AAK31487.1|  301|Caenorhabditis elegans Hypothetical
           protein F13H8.6 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 552 EVWAALDDECLKRLKNW 602
           E W  L ++C+KRLK W
Sbjct: 259 EEWVDLPEKCMKRLKEW 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,336,945
Number of Sequences: 27780
Number of extensions: 340601
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)