Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0938
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36925.1 68417.m05234 expressed protein                             29   4.3  
At3g50430.1 68416.m05516 expressed protein                             29   4.3  
At4g39160.1 68417.m05546 myb family transcription factor contain...    28   7.6  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    28   7.6  
At2g24130.1 68415.m02883 leucine-rich repeat transmembrane prote...    28   7.6  
At4g38200.1 68417.m05392 guanine nucleotide exchange family prot...    27   10.0 
At2g23360.1 68415.m02790 transport protein-related contains Pfam...    27   10.0 
At1g24070.1 68414.m03038 glycosyl transferase family 2 protein s...    27   10.0 

>At4g36925.1 68417.m05234 expressed protein
          Length = 156

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +3

Query: 51  IKEYLNMSTFINIGRKLLITSIFRLQCVSQFKLKPGYTRSIHSSTGLFIKMY 206
           +K + ++   + +GR LL+ S F L+ +  F     YT  + +   +F  ++
Sbjct: 99  VKSFKSLEVTVELGRILLVLSFFHLRFIPMFFALFSYTAFVFAVLSVFSDVF 150


>At3g50430.1 68416.m05516 expressed protein 
          Length = 642

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 315 RLNKEDWTKKTTQEIFEIFPIFGKYCSQHSLCISSEIFDNFIDNLTDTIQMATDSQLKTL 494
           +L K +W+  T  +IF +     K  SQ     + EIFD +++++  T+      +L T+
Sbjct: 176 KLEKANWS--TVSDIFRVLRNILKRLSQED---NEEIFDVYLESVNSTLAKVPWCRLDTI 230

Query: 495 F 497
           F
Sbjct: 231 F 231


>At4g39160.1 68417.m05546 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 545

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/78 (20%), Positives = 34/78 (43%)
 Frame = +3

Query: 162 TRSIHSSTGLFIKMYMEKENEYAYSVLENKGYAINIYTKHSSEAISQEEFQRLNKEDWTK 341
           + +++ S   +     ++E+E+    +E+  Y  N   K  S    Q    + ++  W+K
Sbjct: 336 SNNMNGSGSQYHSQGFDEEDEFGDFGIESSEYQENNVVKPDSPVNYQTYMNKTSRTRWSK 395

Query: 342 KTTQEIFEIFPIFGKYCS 395
           + T+  +E    FG   S
Sbjct: 396 EDTELFYEGIQEFGSNLS 413


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
           similar to guanine nucleotide exchange factor [Homo
           sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
           domain
          Length = 1706

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +3

Query: 51  IKEYLNMSTFINIGRKLLITSIFRLQCVSQFKLKPGYTRSIHSSTGLFIKMYMEK--ENE 224
           +K+YL +S   N    + I SIF+LQC     L       + +  G+F  M + +  EN 
Sbjct: 353 VKQYLCLSLLKNSA--VSIMSIFQLQCAIFMSLLSKLRSVLKAEIGIFFPMIVLRVLENV 410

Query: 225 YAYSVLENKGYAINIYTKHSSE 290
              S L+ K   +N+  K S +
Sbjct: 411 LQPSYLQ-KMTVLNLLDKMSQD 431


>At2g24130.1 68415.m02883 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 980

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 408 CISSEIFDNFIDNLTDTIQMATDSQLKTLFYSLNM 512
           CI+ EI D   +NLT TI +   S L+ L   LN+
Sbjct: 416 CINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNL 450


>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
           similar to Brefeldin A-inhibited guanine
           nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
           contains Pfam profile PF01369: Sec7 domain
          Length = 1698

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 51  IKEYLNMSTFINIGRKLLITSIFRLQCVSQFKLKPGYTRSIHSSTGLFIKM 203
           IK+ L +S   N    L + SIF+LQC     L   Y   + S  G+F  M
Sbjct: 343 IKQLLCLSLLKNSA--LSVMSIFQLQCAIFTTLLRKYRSGMKSEVGIFFPM 391


>At2g23360.1 68415.m02790 transport protein-related contains Pfam
           PF05911: Plant protein of unknown function (DUF869)
           profile; weak similarity to Intracellular protein
           transport protein USO1 (Swiss-Prot:P25386)
           [Saccharomyces cerevisiae]
          Length = 886

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
 Frame = +3

Query: 393 SQHSLCISSEIFDNFIDNL------TDTIQMATDSQLKTLFYSLNMWPETAS--IRTRNY 548
           S HS  I SE  +N  + L        T++ A + ++  L +S NM+  TAS  +   ++
Sbjct: 266 SPHSPMIDSEKINNLTEQLCLLEEENKTLREALNKKVSELQFSRNMYSRTASRLLEFESH 325

Query: 549 IEVWAALDDECLKRLKNWSHDEMLSFISLF 638
           +E  +   +    R  N SH+  L+ ++ F
Sbjct: 326 LEESSRGTNIEPSRSSNVSHEVSLASVTEF 355


>At1g24070.1 68414.m03038 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 552

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 311 KLFLRYSFARMFCINIYCITFIF*HTVCIFILFF 210
           KL+L YSF  +  I ++C TFIF   +    +FF
Sbjct: 380 KLYLVYSFFFLRKIIVHCFTFIFYCVILPTSVFF 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,807,662
Number of Sequences: 28952
Number of extensions: 290734
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)