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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0937
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    31   0.56 
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964...    31   0.98 
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699...    30   1.7  
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775...    29   3.0  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    29   3.0  
06_03_0355 + 19822110-19824491                                         29   4.0  
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539     29   4.0  
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522...    28   5.2  
01_06_0241 - 27813076-27813622,27813695-27814125                       28   5.2  
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812...    28   6.9  
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478...    28   6.9  
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001...    28   6.9  
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    27   9.2  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    27   9.2  
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354...    27   9.2  
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    27   9.2  
03_02_0908 - 12308192-12308431,12309481-12309693                       27   9.2  

>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
            31029955-31030017,31031597-31031704,31031772-31031836,
            31031928-31032015,31032104-31032157,31032234-31032380,
            31033358-31033429,31034077-31034226,31034317-31034430,
            31034762-31034875,31035925-31036077,31037437-31037529,
            31038202-31038318,31038984-31039086,31039192-31039376,
            31039448-31039522,31040451-31040534,31041547-31041588,
            31041668-31041847,31042109-31042162,31042239-31042280,
            31042869-31042967,31043040-31043174,31043325-31043427,
            31045061-31045134,31045227-31045270,31045393-31045471,
            31045592-31045705,31045842-31045946,31046027-31046161,
            31046447-31046546,31046870-31046883,31046936-31047004,
            31047079-31047182,31047299-31047347,31047931-31048023,
            31048102-31048210,31048619-31048755,31048851-31048928,
            31049015-31049104,31049402-31049467,31049546-31049638,
            31049711-31049839,31050024-31050122,31051366-31051512,
            31051605-31051910
          Length = 2050

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
 Frame = +2

Query: 92   KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 271
            K L  V   LKS+++        +++   K+   + E     K ++SL   +E   SSQ 
Sbjct: 1426 KKLNDVEASLKSEIDRHRKI---NINIKRKLDASAKEKEELTKEKQSLSKQLEDLKSSQK 1482

Query: 272  KHTETQEKNPLPDKD--------AIEAEKEKNK------------FLNGIENFDPTKLKH 391
              TE   +  + +KD         +E E++ NK            F   I+N +  + + 
Sbjct: 1483 TTTENSNEQAIKEKDFRIQTLEKVLEKERDDNKKEKAFRRRNEKVFTTAIQNMNQERKQV 1542

Query: 392  TETCEKNPLPTKDVIE 439
             E+ EK+    K+VIE
Sbjct: 1543 EESIEKHRQAVKEVIE 1558


>02_02_0704 +
           13095449-13095584,13095671-13095990,13096102-13096423,
           13096556-13096632,13096744-13097127
          Length = 412

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 26/90 (28%), Positives = 40/90 (44%)
 Frame = +2

Query: 68  SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI 247
           S S TP+ KDLP     L ++  G      +  +  ++  LP++   A   +      G 
Sbjct: 145 SPSPTPT-KDLPCKPVALNARKAG---GAFQPFEKEKRAELPASSTTAAASSTVVGDSGD 200

Query: 248 EKFDSSQLKHTETQEKNPLPDKDAIEAEKE 337
           +  D    KH ET + N   DKDA + +KE
Sbjct: 201 KPTDDDTEKHMETDKDN---DKDAKDKDKE 227


>07_03_1577 -
           27869596-27869682,27869769-27869869,27869956-27869995,
           27870879-27870953
          Length = 100

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 116 DLKSQLEGFNTSCLRDVDTNEKIVL 190
           DL+S+L+  NT CL + + N+K+++
Sbjct: 54  DLQSKLDAVNTECLAEKEKNKKLII 78


>07_03_0735 +
           21075033-21075846,21077065-21077199,21077384-21077517,
           21077604-21077814,21078033-21078270,21078346-21078496,
           21078593-21078931
          Length = 673

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 179 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 298
           K VLPS E++A ++   S   GIE+  +  +   + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 78  TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 170
           TLPP + SP SP T   SSK  TP+ S  S+
Sbjct: 31  TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61


>06_03_0355 + 19822110-19824491
          Length = 793

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 155 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET---QEKNPLPDKDAIE 325
           + +V    +++LP+ E+VATE    +    +E  D+  L  T     +E   +P+ D  E
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAETVVMTHEEFVAVPEDDEEE 261

Query: 326 AEKEKNKFLNGI 361
           A+ ++     G+
Sbjct: 262 ADGDEENDATGL 273


>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
          Length = 585

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 262 EPAEAHRDSGEEPASGQRRYRSGEGKEQ 345
           +P  A  D  E   +G RR+RSG G++Q
Sbjct: 206 DPRAADDDHAEAARNGVRRWRSGSGQQQ 233


>02_05_0599 -
           30251708-30251815,30251864-30251984,30252068-30252215,
           30252303-30252480,30252587-30252625,30252704-30252799,
           30252879-30253030,30253336-30253722,30253836-30253940,
           30254083-30254098
          Length = 449

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 289 GEEPASGQRRYRSGEGKEQIPERHRELR--SH*AEAHG-DVRKEPAP 420
           GEEPA      R+G G    P +HRE +  SH +  +G ++R+   P
Sbjct: 6   GEEPAHDFLSLRAGGGSSSPPFQHREEQHSSHSSRGYGMEIRRSLRP 52


>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 262 EPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS-H*AEAHGDVRKEPAPHK 426
           EP   H  + ++     R +R+     ++ + HR  RS H A  + +V +    H+
Sbjct: 23  EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78


>03_05_0070 -
           20478396-20478505,20478605-20478780,20481162-20481265,
           20481346-20481504,20481718-20481857,20482222-20482311,
           20482902-20482970,20484295-20484516,20486175-20486293,
           20486377-20486492,20488058-20488146,20488790-20488883
          Length = 495

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 92  KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 184
           K+L +   DLKS+LEG+NT    D++  + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296


>02_03_0171 +
           15945591-15945681,15947068-15947138,15947715-15947817,
           15948189-15948328,15948535-15948693,15948775-15948878,
           15950373-15950548,15952643-15952832,15953704-15953803,
           15954171-15954339,15954908-15954990,15955073-15955149,
           15955386-15955557
          Length = 544

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 92  KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 184
           K+L +   DLKS+LEG+NT    D++  + +
Sbjct: 88  KELDERMHDLKSELEGYNTGDSDDINKKKAL 118


>01_05_0147 +
           18597194-18597643,18598347-18598681,18600073-18600147,
           18600325-18600427,18601554-18601642,18602953-18603064,
           18604093-18604146,18604271-18604319,18606236-18606347,
           18606389-18606436,18607000-18607327
          Length = 584

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 308 PEAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFHWCRRHGDS 150
           P++ SSP    AS+ S    R  R ++SGS + +    +     H  +  G S
Sbjct: 33  PDSASSPSPSSASSPSRSPDRRSRSRSSGSKRRKASSSSRRHRHHHHKSSGRS 85


>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = -1

Query: 246 IPSNKDFWVFSVATSSADGSTIFSLVSTSRRQLVL 142
           +PSN+ +  ++  TSS++GS  FSL +++   + L
Sbjct: 500 LPSNESWDYYASRTSSSNGSVYFSLQNSTNSDMDL 534


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 27  PLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKR 182
           P P    I +++PAP    PP ++S R+P     SSK   P       P  R
Sbjct: 651 PPPPAPGIGNKFPAPPPPPPPPRSSSRTPTGAATSSKGPPPPPPPPLPPANR 702


>07_03_1391 +
           26234647-26235026,26235112-26235226,26235345-26235410,
           26235519-26235607,26235717-26235807,26235917-26236063,
           26236160-26236252,26236373-26236474,26236581-26237255
          Length = 585

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 338 FPSPLR*RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGS 219
           +PS L+ R   +   SP S  A+AG   +SR+   + S S
Sbjct: 519 YPSELQLRALEQVHLSPRSAAAAAGGRPSSRFASPQRSSS 558


>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 299 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKH 391
           P  ++   E EKEK K +N +    P KLKH
Sbjct: 489 PFTEEKLQELEKEKEKKINDMAKGWPEKLKH 519


>03_02_0908 - 12308192-12308431,12309481-12309693
          Length = 150

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +2

Query: 206 VATEKTQKSLFDGIE-----KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENF 370
           V T++  K L+D +      K +S  +   + ++++PL  +       ++N+F+NGI  F
Sbjct: 72  VHTKRRNKLLYDRMRDIVFVKLNSKLINKRDNKDRDPLEKEVNDAVSNDENEFINGIVPF 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,699,139
Number of Sequences: 37544
Number of extensions: 358703
Number of successful extensions: 1191
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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