Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0937
         (624 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering In...    26   1.1  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      25   2.0  
AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.        24   3.4  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   4.5  
AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    23   6.0  

>AY578809-1|AAT07314.1|  358|Anopheles gambiae Sloan-Kettering
           Institute proto-oncogeneproduct protein.
          Length = 358

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 478 TRKCISLVSPYFNIDVSQIELRRPLQVLFLFLYN 579
           TR C+  +     +D S  ++ R +Q L ++LYN
Sbjct: 133 TRLCLPQIFNNILMDFSVEQINRSIQELMIYLYN 166


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 386 KHTETCEKNPLPTKDVIEQEKS 451
           K+T TCE   LP +DV+  + S
Sbjct: 477 KNTTTCEDYALPYQDVVPSDPS 498


>AJ439353-11|CAD27933.1|  615|Anopheles gambiae 30E5.11 protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 197 QTEAQSFHWCRRHGD 153
           QT +Q+ HW + HGD
Sbjct: 222 QTLSQANHWLKSHGD 236


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -3

Query: 400 RLRVLQLSGIEVLDAVQEFVLFLLRFDS 317
           R+++  L  +E+++ +Q+F  F   FD+
Sbjct: 7   RVKMFNLKRVEIMNTLQDFEEFTKSFDA 34


>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 215 EKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNG 358
           E+T+KSL + +E    ++      + +N    ++A +A++ KN   +G
Sbjct: 148 ERTEKSLKEALEGCSQTETPVNGKRGRNLRSTEEADDAKRAKNDAPSG 195


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,373
Number of Sequences: 2352
Number of extensions: 12762
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60632475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)