Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0937
(624 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 1.8
DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein. 21 7.4
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 21 7.4
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 21 7.4
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 21 7.4
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 21 7.4
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 21 7.4
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 21 7.4
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 21 7.4
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 7.4
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 7.4
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 7.4
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 7.4
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 7.4
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 7.4
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 7.4
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.8
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.4 bits (48), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 68 SVSDTPSLKDLPKVATDLKS 127
SVS PS+K + K ATD S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175
>DQ435334-1|ABD92649.1| 135|Apis mellifera OBP17 protein.
Length = 135
Score = 21.4 bits (43), Expect = 7.4
Identities = 7/24 (29%), Positives = 16/24 (66%)
Frame = +2
Query: 116 DLKSQLEGFNTSCLRDVDTNEKIV 187
+LKS L + C++++ T ++I+
Sbjct: 21 ELKSGLHTVQSVCMKEIGTAQQII 44
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 54 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 91
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 54 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 91
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 54 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 91
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 54 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 91
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 54 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 91
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 54 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 91
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 54 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 91
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 303 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 340
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 303 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 340
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 303 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 340
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 303 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 340
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 303 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 340
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 303 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 340
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.4 bits (43), Expect = 7.4
Identities = 14/38 (36%), Positives = 15/38 (39%)
Frame = +1
Query: 238 RRYREV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIP 351
R YRE E RD E S + R EQIP
Sbjct: 303 REYREYRETSRERSRDRRERGRSREHRIIPSHYIEQIP 340
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +3
Query: 567 VFVQWQPCL 593
+F+QW PCL
Sbjct: 298 LFLQWLPCL 306
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +3
Query: 567 VFVQWQPCL 593
+F+QW PCL
Sbjct: 298 LFLQWLPCL 306
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +3
Query: 567 VFVQWQPCL 593
+F+QW PCL
Sbjct: 298 LFLQWLPCL 306
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +3
Query: 567 VFVQWQPCL 593
+F+QW PCL
Sbjct: 298 LFLQWLPCL 306
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +3
Query: 567 VFVQWQPCL 593
+F+QW PCL
Sbjct: 298 LFLQWLPCL 306
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +3
Query: 567 VFVQWQPCL 593
+F+QW PCL
Sbjct: 298 LFLQWLPCL 306
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +3
Query: 567 VFVQWQPCL 593
+F+QW PCL
Sbjct: 366 LFLQWLPCL 374
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +3
Query: 567 VFVQWQPCL 593
+F+QW PCL
Sbjct: 366 LFLQWLPCL 374
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,793
Number of Sequences: 438
Number of extensions: 3774
Number of successful extensions: 25
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -