Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0937
(624 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 38 0.004
At3g57780.1 68416.m06436 expressed protein 31 0.62
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 31 0.62
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 30 1.1
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 30 1.1
At3g28770.1 68416.m03591 expressed protein 30 1.1
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 29 1.9
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 2.5
At5g45520.1 68418.m05591 hypothetical protein 29 2.5
At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794... 29 3.3
At2g22795.1 68415.m02704 expressed protein 29 3.3
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 3.3
At1g09720.1 68414.m01091 kinase interacting family protein simil... 29 3.3
At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC1... 28 4.4
At5g06430.1 68418.m00720 thioredoxin-related contains weak simil... 28 5.8
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 5.8
At1g11790.1 68414.m01353 prephenate dehydratase family protein s... 28 5.8
At4g13780.1 68417.m02137 methionine--tRNA ligase, putative / met... 27 7.7
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 7.7
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 27 7.7
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Frame = +2
Query: 158 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 337
R+ + NE+ + + E E+ K+ + EK Q+K + +E+N K+ +E +
Sbjct: 744 REKEENERRIKEAREKAELEQRLKATLEQEEK--ERQIKERQEREENERRAKEVLEQAEN 801
Query: 338 KNKFLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQEKSAXXXXXXXXXANVSR 496
+ K +E + +LK T E+N ++ IE E+ A + R
Sbjct: 802 ERKLKEALEQKENERRLKETREKEENKKKLREAIELEEKEKRLIEAFERAEIER 855
Score = 30.7 bits (66), Expect = 0.82
Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +2
Query: 167 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 346
+ NE+ E E+ K + +K + +LK T +E+N ++AIE E+++ +
Sbjct: 786 EENERRAKEVLEQAENERKLKEALE--QKENERRLKETREKEENKKKLREAIELEEKEKR 843
Query: 347 FLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQEK 448
+ E + +LK E+ + ++ E+E+
Sbjct: 844 LIEAFERAEIERRLKEDLEQEEMRMRLQEAKERER 878
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 31.1 bits (67), Expect = 0.62
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 221 TQKSLFDGIEKFDSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 397
TQ L D + + + TE +E N L D E EKE++K L+ I + + E
Sbjct: 58 TQSKLSDDDDHAVNDSSEKTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPE 117
Query: 398 TCE 406
TCE
Sbjct: 118 TCE 120
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 31.1 bits (67), Expect = 0.62
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 272 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
K +E P P+ + + EK+ FLNG K KNP+P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 220 LLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 101
++ GN +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 200 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 343
EDV EK D +++ D Q + ++EK +KD E EKEK+
Sbjct: 642 EDVVQEKDGDQEEDVVQEKDGDQEEDGVSKEKEQEKEKDPKEKEKEKD 689
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +2
Query: 170 TNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKF 349
TNE V E+V K + + EK +S K ET++ L + + KE++
Sbjct: 763 TNENRVRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGE 822
Query: 350 LNGIENFDPTKLKHTETCEKN 412
N + + + E EKN
Sbjct: 823 DNKEDKEESKDYQSVEAKEKN 843
Score = 28.7 bits (61), Expect = 3.3
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Frame = +2
Query: 74 SDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 253
S T S D K D + + + + D K +++ KT ++ E+
Sbjct: 716 SQTDSKDD--KSVDDKQEEAQIYGGESKDDKSVEAKGKKKESKENKKTKTNENRVRNKEE 773
Query: 254 FDSSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKD 430
K +E EK + KDA E + NK L+ EN D K + E +++ +KD
Sbjct: 774 NVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKEDKEESKD 833
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 29.5 bits (63), Expect = 1.9
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = +2
Query: 68 SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA-TEKTQKSLF 238
S SD+PS L+D+ ++ +LK L+G + VDTN +AE A EK +L
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTNLDAEDRAAERKAEVEKAVSTLA 591
Query: 239 D---GIEKFDS 262
EKFDS
Sbjct: 592 QKSKPTEKFDS 602
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 278 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +2
Query: 221 TQKSLFDGIEKFDSSQLKHTET-QEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 397
T K L D +E+ D + +T +E+ ++ + + ++ +N N + K KH E
Sbjct: 575 TDKKLKDLMEREDDQVQNYGQTSKEEKGNVEETGKQEDGDQGDGINEEANLEDGK-KHDE 633
Query: 398 TCEKNPLPTKDVIEQEK 448
E+ L + +V+E+EK
Sbjct: 634 GKEERSLKSDEVVEEEK 650
>At3g54290.1 68416.m06000 expressed protein contains Pfam PF03794:
Domain of Unknown function
Length = 350
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +2
Query: 227 KSLFDGIEKFDSSQLK---HTETQEKNPLPDKDAIEAEKEKNKFL 352
++LF +F S Q+ H E +EK+ LP +A E KEK K L
Sbjct: 252 EALFSLASRFKSLQMMCKTHFEEEEKDLLPMVEAAEMGKEKQKKL 296
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 28.7 bits (61), Expect = 3.3
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Frame = +2
Query: 113 TDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQE 292
T+ K ++E + D +T EKI E E+T++ + EK +SS + TE +E
Sbjct: 471 TEAKEKVESSSQEKNEDKET-EKI-----ESSFLEETKEKEDETKEKEESSSQEKTEEKE 524
Query: 293 KNPLPDKDAIEAEKEKNKFLNGIE-----NFDPTKLKHTETCEKNPLPTKDVIEQEKS 451
++++ E+ K+K IE + + +K TET EK +++ +++++
Sbjct: 525 TETKDNEESSSQEETKDKENEKIEKEEASSQEESKENETETKEKEESSSQEETKEKEN 582
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/98 (21%), Positives = 44/98 (44%)
Frame = +2
Query: 158 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 337
++ + EK+ S E ++T EK +SS L+ T+ +E +++ EK
Sbjct: 469 KETEAKEKVESSSQEKNEDKET--------EKIESSFLEETKEKEDETKEKEESSSQEKT 520
Query: 338 KNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKS 451
+ K +N + + + T+ E + ++ QE+S
Sbjct: 521 EEKETETKDNEESSSQEETKDKENEKIEKEEASSQEES 558
Score = 27.5 bits (58), Expect = 7.7
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +2
Query: 200 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK-NKFLNGIENFDP 376
ED EK + S + E+ ++ + E+ + DK+ + EKE+ + EN
Sbjct: 505 EDETKEKEESSSQEKTEEKETETKDNEESSSQEETKDKENEKIEKEEASSQEESKENETE 564
Query: 377 TKLK-HTETCEKNPLPTKDVIEQEKSA 454
TK K + + E+ + IE+E+SA
Sbjct: 565 TKEKEESSSQEETKEKENEKIEKEESA 591
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 68 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 232
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At1g09720.1 68414.m01091 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 928
Score = 28.7 bits (61), Expect = 3.3
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = +2
Query: 62 ACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFD 241
AC VSD+ D+ K T L+ +L R D N+ + E +T K
Sbjct: 384 ACLVSDS---MDMKKRITVLEDELRKVKNLFQRVEDQNKNLHKHLTEANSTAKDLSGKLQ 440
Query: 242 GI---EKFDSSQLKHTETQEKNPLPDKDAIEAEKE 337
+ E + L + QE++ + D D+I E+E
Sbjct: 441 EVKMDEDVEGDGLNPEDIQEEDTVEDSDSISNERE 475
>At1g32750.1 68414.m04038 HAC13 protein (HAC13) identical to HAC13
[Arabidopsis thaliana] gi|21105767|gb|AAM34782; contains
Pfam domains, PF00439: Bromodomain and PF00240:
Ubiquitin family
Length = 1919
Score = 28.3 bits (60), Expect = 4.4
Identities = 23/94 (24%), Positives = 42/94 (44%)
Frame = +2
Query: 164 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKN 343
V + E +LP E +T SL FD E QE+ P + ++E EK +
Sbjct: 112 VVSEEDHLLPKKEYFSTAVALGSLKSRASVFDDEDYDEEEEQEEEQAPVEKSLETEKREP 171
Query: 344 KFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
L + + + + + +++ + T+DV E+E
Sbjct: 172 VVLKEDKALEYEE-EASILDKEDHMDTEDVQEEE 204
>At5g06430.1 68418.m00720 thioredoxin-related contains weak
similarity to Swiss-Prot:Q9SEU7 thioredoxin M-type 3,
chloroplast precursor (TRX-M3) [Arabidopsis thaliana]
Length = 194
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = -2
Query: 392 CASA*WD--RSSRCRSGICSFPSPLR*RLCPEAGSSPESRCASAGSNQTSRYRRIKTSGS 219
C WD + + S +C F P R GS S S G N R ++ S S
Sbjct: 19 CLKWPWDSNKQPKSSSSVCDFQGPWLFRSMQTIGSIALSSLTSFGQNPNFRPKKKPLSSS 78
Query: 218 SQWQRLQQTEA 186
Q + Q+ A
Sbjct: 79 EQGEAEQRAFA 89
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 266 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
QL+ T+ + K P E +K K D K ++ E C P+P + ++E
Sbjct: 413 QLEETDVKRKRNAPGPSPKEPAMKKQK-----SEMDCDKEENAEDCFGEPVPERFIVEMR 467
Query: 446 KS 451
+S
Sbjct: 468 RS 469
>At1g11790.1 68414.m01353 prephenate dehydratase family protein
similar to gi|2392772 and is a member of the PF|00800
Prephenate dehydratase family. ESTs gb|T21562 and
gb|T21062 come from this gene
Length = 392
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 350 GICSFPSPLR*RLCP-EAGSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQSFH 174
G+ F + R R C E SS R +A + R +K S S + Q+T++ SFH
Sbjct: 23 GLAEFDADKRRRFCLWECSSSASQRAVTAIEGEIPFSRELKKS-SDELGLTQETQSLSFH 81
>At4g13780.1 68417.m02137 methionine--tRNA ligase, putative /
methionyl-tRNA synthetase, putative / MetRS, putative
similar to methionyl-tRNA synthetase [Oryza sativa]
GI:4091008; contains Pfam profiles PF00133: tRNA
synthetases class I (I, L, M and V), PF01588: Putative
tRNA binding domain
Length = 797
Score = 27.5 bits (58), Expect = 7.7
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Frame = +2
Query: 71 VSDTP-SLKDLP-KVATDLKSQLEGFNTSCLRDVDTNEKI----VLPSAEDVATEKTQKS 232
VSDT S DL K+ +L S L F L + + V+P A D + KS
Sbjct: 383 VSDTSFSWTDLQAKLNGELLSNLGNFVNRVLSFIAKPDNAGYGSVIPDAHDAESHSLTKS 442
Query: 233 LFDGIEKFDSSQLKHTETQEKNPLPD--KDAIEAEKEKNKFL 352
L + +EKF + ++ E EK L K A+ E N +L
Sbjct: 443 LAEKVEKFVA---EYVEAMEKVKLKQGLKTAMLISSEGNYYL 481
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +2
Query: 266 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
QL+ T+ + K P E +K I D K ++ E C P+P + ++E
Sbjct: 359 QLEETDVKRKRNAPGPSPKEPAMKKQ-----ISEMDCDKEENAEDCFGEPVPERFIVEMR 413
Query: 446 KS 451
+S
Sbjct: 414 RS 415
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +1
Query: 286 SGEEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKGRH*AREISLNHY 465
S E+ A R + + K + ER + SH ++ +R EP H RE+ Y
Sbjct: 489 SAEQKAQEIRAAAASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEY 548
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,217,290
Number of Sequences: 28952
Number of extensions: 275105
Number of successful extensions: 1057
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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