Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0934
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    50   3e-08
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.17 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.69 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   4.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 49.6 bits (113), Expect = 3e-08
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 4/171 (2%)
 Frame = +1

Query: 193 SDTCLHAIPDEIKN-LINLQSLLMFGNKIEVFNE-NITTLRKLKVLDLSRNELKSIPESL 366
           SD  L  +  ++ N L  L  L + GN I   +         LK LDLS NEL S+P++L
Sbjct: 391 SDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSVPDAL 450

Query: 367 NNMKELTSINFSSNQIEDM--PKIGDLPNLIIIDISNNKLKSFLDVESANLPHLTDLKLK 540
            ++  L +++   N+I +       +L  L  + +  N + +       +LP+L  L L 
Sbjct: 451 RDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNLSRGMLWDLPNLQILNLA 510

Query: 541 SNLIESIPSCIGQKLSSLKNFDISDNQITVVPGEVANISKIKDLNLKGNKL 693
            N ++ +     ++   L+   +  N ++ + G   +I+ +  LNL  N +
Sbjct: 511 RNKVQHVERYAFERNMRLEAIRLDGNFLSDINGVFTSIASLLLLNLSENHI 561



 Score = 45.6 bits (103), Expect = 5e-07
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
 Frame = +1

Query: 298 TTLRKLKVLDLSRNELKS--IPES-LNNMKELTSINFSSNQIE--DMPKIGDLPNLIIID 462
           T L +L VL+L+ N L S  + E+    +  L  +N S N +   D     DL  L I+D
Sbjct: 306 TRLEQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILD 365

Query: 463 ISNNKLKSFLDVESANLPHLTDLKLKSNLIESIPSCIGQKLSSLKNFDISDNQI-TVVPG 639
           + NN +          L +L  L+L  N + ++ + +   L  L    +S N I ++ P 
Sbjct: 366 LRNNSIDRIESNAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPL 425

Query: 640 EVANISKIKDLNLKGNKLS 696
              N S +K+L+L GN+L+
Sbjct: 426 AFRNCSDLKELDLSGNELT 444



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
 Frame = +1

Query: 313 LKVLDLSRNELKSIPES--LNNMKELTSINFSSNQIEDM--PKIGDLPNLIIIDISNNKL 480
           +++LDLSRNE+  + E+  L ++++L  ++   N I ++    +  L  L   + S N L
Sbjct: 214 IRILDLSRNEITRLQENSPLLDLRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSL 273

Query: 481 KSFLDVESANLPHLTDLKLKSNLIESIPSCIGQKLSSLKNFDISDNQI 624
            S  +   A+   L ++ L  N +  +P  I  +L  L   +++ N++
Sbjct: 274 DSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRL 321



 Score = 25.0 bits (52), Expect = 0.69
 Identities = 23/111 (20%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
 Frame = +1

Query: 232 NLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLN-NMKELTSINFSSN 408
           ++ +L  L +  N IE F+        LK LD+  N ++S+         ++ +++ S N
Sbjct: 547 SIASLLLLNLSENHIEWFDYAFIP-GNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHN 605

Query: 409 QIEDMPKIGDLPNLIIIDISNNKLKSFLDVESANLPHLTDLKLKSNLIESI 561
           +I ++  +    ++ ++ I+NN +         +  +LT + + +N+IE++
Sbjct: 606 RITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETM 656


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
 Frame = +1

Query: 244 LQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNM-----KELTSINFSSN 408
           LQ L  F  K+  +  N    + L  L      L SI    N M     K L      ++
Sbjct: 296 LQLLESFKRKVNFYPNNQDIEKFLNYLKRGGKTLTSISVESNTMFINILKFLKQKYVKNS 355

Query: 409 QIEDMPKIGDLPNLIIIDISNNKLKSFLDVES 504
           ++E + K  D+  ++IID+   +LKS  D E+
Sbjct: 356 KLEKVIK-HDILRMLIIDLRKKQLKSLEDWEN 386



 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 310 KLKVLDLSRNELKSIPESLNNMKELT 387
           ++ ++DL + +LKS+ +  N M  +T
Sbjct: 367 RMLIIDLRKKQLKSLEDWENEMNIIT 392


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 436 DLPNLIIIDISNNKLKSFLDVESANLPHLT 525
           D  N++ +D+S  K++    V  A  P+LT
Sbjct: 811 DKENILFLDLSTGKVEMITGVGKATSPNLT 840


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 472 NKLKSFLDVESANLPHLTDLKLKSN 546
           N LKSF+D+ +AN   + +   K N
Sbjct: 148 NVLKSFIDLFNANARSVVEKMRKEN 172


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 607 ISDNQITVVPGEVANISKIKDLNLKGNKLS 696
           +S+N  TVV      +S++ DLNLK   L+
Sbjct: 39  VSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 313 LKVLDLSRNELKSIPESLNNMKELTSINFSSNQIEDMPKIGDLPNLI 453
           LKV++     L +I   +NN      +   ++++ D  KI D+ NL+
Sbjct: 72  LKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDI-NLL 117


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 589 SLKNFDISDNQITVVPGEVANISKIKDLNLKG 684
           SLKN +  +N     PG++ N  ++   N  G
Sbjct: 135 SLKNIEPYNNYYIWHPGKIVNGKRVPPTNWVG 166


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 589 SLKNFDISDNQITVVPGEVANISKIKDLNLKG 684
           SLKN +  +N     PG++ N  ++   N  G
Sbjct: 135 SLKNIEPYNNYYIWHPGKIVNGKRVPPTNWVG 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,430
Number of Sequences: 438
Number of extensions: 3460
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)