Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0933
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 308 4e-85
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 177 1e-45
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 173 2e-44
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 142 4e-35
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.033
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.10
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 30 0.31
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 0.41
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.71
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.6
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 27 1.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 1.6
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 1.6
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 2.9
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 3.8
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 3.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 25 6.6
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.6
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 25 6.6
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 6.6
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 25 8.8
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 8.8
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.8
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 25 8.8
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 8.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 308 bits (756), Expect = 4e-85
Identities = 139/205 (67%), Positives = 164/205 (80%)
Frame = +3
Query: 3 SDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
+DEHG+D G YHG S+ Q ER+NVY+NEA+GGKYVPRA+LVDLEPGTMD+V+SG FG +
Sbjct: 25 ADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNL 84
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVVR+E+E+CD LQGFQ
Sbjct: 85 FRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTG 144
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
KIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDN
Sbjct: 145 SGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDN 204
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
EAL I TLK+ +P+Y DLNHLV
Sbjct: 205 EALSSIFANTLKIKSPSYDDLNHLV 229
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 177 bits (430), Expect = 1e-45
Identities = 83/209 (39%), Positives = 124/209 (59%), Gaps = 6/209 (2%)
Frame = +3
Query: 9 EHGIDPTG------AYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGP 170
EHGI P G H ++ + +++E GK+VPR+I VDLEP +D VR+GP
Sbjct: 27 EHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGP 86
Query: 171 FGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXX 350
+ +F P+ V G+ A NN+A+GHYT G E++DSVL+ +R+ +++C LQGF
Sbjct: 87 YKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFG 146
Query: 351 XXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETY 530
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+
Sbjct: 147 GGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTF 206
Query: 531 CIDNEALYDICFRTLKLSTPTYGDLNHLV 617
+DNEA YDIC R L + PTY +LN L+
Sbjct: 207 MVDNEACYDICRRNLDIERPTYENLNRLI 235
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 173 bits (421), Expect = 2e-44
Identities = 81/205 (39%), Positives = 121/205 (59%), Gaps = 2/205 (0%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQLER--INVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
EHGI P G + ++ Q + +++E GKYVPR+I VDLEP +D VR+GP+ +
Sbjct: 27 EHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDL 86
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
F P+ + G+ A NN+A+GHYT G ELVD V D +R+ +++C LQGF
Sbjct: 87 FHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++ D T+ +DN
Sbjct: 147 SGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDN 206
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
E+ YDIC R L + P+Y +LN L+
Sbjct: 207 ESCYDICRRNLDIERPSYENLNRLI 231
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 142 bits (344), Expect = 4e-35
Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 3/206 (1%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFR 188
EHGI P G + ++R +V++ ++ +Y+PRAIL+DLEP ++++ S +G ++
Sbjct: 28 EHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYN 87
Query: 189 PDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
P+N + ++ GAGNNWA G Y+ + + ++D++ +E++ D L+GF
Sbjct: 88 PENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCID 539
++ + YP +I+ TYSV P S VSD VV+PYN+ L++ +L N D +D
Sbjct: 147 SGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLD 206
Query: 540 NEALYDICFRTLKLSTPTYGDLNHLV 617
N AL I L PT+ N LV
Sbjct: 207 NAALAHIAADRLHTQNPTFHQQNQLV 232
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.033
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 2/204 (0%)
Frame = +1
Query: 7 TSTASTPPVPTMGTLTCSWSASMYTTMKP-PAAST-CPAPFSSTWSPAPWTLSAPDLXXX 180
T T+++ P+ T T + S +++ ++ P P+ ST C S + +LS P
Sbjct: 79 TDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTV 138
Query: 181 XXXXXXXXXXXXXXXXXGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAP 360
DT L + + S S ++ +S+L P +
Sbjct: 139 PPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTST---SIPPTGGSSSLSTP-ITPT 194
Query: 361 GPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTAST 540
P + SS+ + T T S T T SP P T + T + +S L T PT
Sbjct: 195 VPPTSTSSTSIPIPPTSTSS-TDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPP 253
Query: 541 TRLYTTSASALSNCPHPPTVTLTT 612
T +TS++++ P PPT T +T
Sbjct: 254 T---STSSTSI---PIPPTSTSST 271
Score = 29.5 bits (63), Expect = 0.41
Identities = 53/214 (24%), Positives = 79/214 (36%), Gaps = 12/214 (5%)
Frame = +1
Query: 7 TSTASTPPVPTMGTLTCSWSASMYTTMKPPAASTCPAPFSSTWSP----APWTLSAPDLX 174
TS+ STPP P + T + S+ + +T ST P ++ +P P T S+ L
Sbjct: 364 TSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLT 423
Query: 175 XXXXXXXXXXXXXXXXXXXGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVA 354
P TT S+ + + L ++ IP +
Sbjct: 424 TTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYTS 483
Query: 355 APGPVWAPSSSQRSVKSTP--TES*THTQ*SPRPKYQTLSSNHTMRLS-QFTS*LKTQTK 525
P V STP T + T + P SSN+T+ S TS T T
Sbjct: 484 TP------------VTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531
Query: 526 PTASTTRLY-----TTSASALSNCPHPPTVTLTT 612
T ST+ LY T++ A +NC +V T+
Sbjct: 532 CTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTS 565
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 7 TSTASTPPVPTMGTLTCSWSASMYTTMKPPAASTCPAPFSSTWSPAPWTL 156
TS+ STPP P + T + S+ + +T ST P ++ +P T+
Sbjct: 310 TSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTV 359
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.5 bits (68), Expect = 0.10
Identities = 50/194 (25%), Positives = 71/194 (36%), Gaps = 1/194 (0%)
Frame = +1
Query: 7 TSTASTPPVPTMGTLTCSWSASMYTTM-KPPAASTCPAPFSSTWSPAPWTLSAPDLXXXX 183
TST+STP T S S++ T++ A S P +S S + + S+ L
Sbjct: 336 TSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPL---- 391
Query: 184 XXXXXXXXXXXXXXXXGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPG 363
P T VL + + SS + N A AS+ + SV +
Sbjct: 392 --TSANSTTSTSVSSTAPSYNTSSVLPTSSVSST-PLSSANSTTATSASSTPLSSVNSTT 448
Query: 364 PVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTT 543
A S+ SV ST S + T T +S + L+ S T T T+
Sbjct: 449 ATSASSTPLSSVNSTTATSASSTP-LTSVNSTTATSASSTPLTSVNSTSATSASSTPLTS 507
Query: 544 RLYTTSASALSNCP 585
TTS S S P
Sbjct: 508 ANSTTSTSVSSTAP 521
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 29.9 bits (64), Expect = 0.31
Identities = 29/105 (27%), Positives = 50/105 (47%)
Frame = +1
Query: 235 PRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPT 414
PR++T++ L S++ S S+ Q + +S L+ PS AP P + SSS T
Sbjct: 219 PRESTEKPLLSVSALSS-SSHLQPTSATSSSSRLY-PSRPAPTPPASSSSSPLLSSQTVK 276
Query: 415 ES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRL 549
+ ++ P P + S+++ +R S L QT T+ T +
Sbjct: 277 TTTSNASRQPSPLVSSKSTDNIIR-SHSPVLLTPQTLSTSETKHI 320
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 29.5 bits (63), Expect = 0.41
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 514 TQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 612
T T +T + TTS S ++CP P T+ + T
Sbjct: 166 TSTSCNPATVLIVTTSGSTSTSCPPPTTILIVT 198
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.71
Identities = 24/102 (23%), Positives = 53/102 (51%)
Frame = +1
Query: 262 SSLTRSSM*SAKNQNLAIAYRASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*S 441
SS T ++ S+ + + + + +S+ S ++ + SSS S S+ + S + + S
Sbjct: 147 SSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 206
Query: 442 PRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSAS 567
P + SS+H+ S +S + ++P++S++ + T S+S
Sbjct: 207 SVPITSSTSSSHSSSSSSSSS-SSSSSRPSSSSSFITTMSSS 247
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 1.6
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +1
Query: 259 LSSLTRSSM*SAKNQNLAIAYRASNLHIPSVA--APGPVWAPSSSQRSVKSTPTES*THT 432
L+S T SS+ S+ + + S+ S A + + SSS S S+P+ S + T
Sbjct: 170 LTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSST 229
Query: 433 Q*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSASALSNCPHPPTVTLTT 612
S ++ S + S +S + + TAS++ ++ S+ S+ PT T +T
Sbjct: 230 LTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSST 289
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 234 AKGHYTEGAELVDSVLDVVRKESESCDCLQ 323
A+GH G ELV + D +RK+SE+ L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 1 ALTSTASTPPVPTMGTLTCSWSASMYTTMKPPAASTCPAP 120
A T+ +TP + G+L +A+ T+ PPA+ST P
Sbjct: 156 ASTTNTTTPAAASTGSLFGKPAATGTTSNAPPASSTSTTP 195
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 58 SWSASMYTTMKPPAASTCPAPFSSTWSPAPWTLSA 162
S +AS PP A+ + SST SPAPW A
Sbjct: 396 SGAASPQAGHPPPWAAASTSVSSSTSSPAPWAKPA 430
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 165 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 266
GP+G +F P F+F +G NW+ Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 1 ALTSTASTPP-VPTMGTLTCSWSASMYTTMKPPAASTCPAPFSSTWSPAP 147
A+ + A P T+ + + S S T P +A+T P P S+T P P
Sbjct: 538 AIEAAAPIPTSADTVESKHAAGSGSATTIPSPGSATTKPTPGSATTKPTP 587
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 307 LAIAYRASNLHIPSVAAPGPVWAPSSSQRSVK 402
LA+ Y + + +V APG +W+P+ +R K
Sbjct: 159 LAVRYGPLGIRV-NVCAPGTIWSPAWDERFKK 189
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.8
Identities = 46/206 (22%), Positives = 84/206 (40%), Gaps = 2/206 (0%)
Frame = +1
Query: 1 ALTSTASTPPVPTMGTLTCSWSASMYTTMKPPAASTCPAPFSSTWSPAPWTLSAPDLXXX 180
A+TS+ + PT + SWS+S + + P A++ A SST S A ++S
Sbjct: 936 AITSSVAASVTPTSSSSASSWSSS--SEVDPSTAAS--ATGSSTSSIATASVSGSSTSSV 991
Query: 181 XXXXXXXXXXXXXXXXXGPRDTTQRVLSSLTRSSM*SAKNQNLAIAYRASNLHIPSV--A 354
+T V ++ S S+ A S++ + SV +
Sbjct: 992 ATASATDSSTSSIAAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAVASVTGS 1051
Query: 355 APGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTKPTA 534
+ V S++ S S T S T + S +++ + T ++ +S + + TA
Sbjct: 1052 STSSVATASATDSSTSSVATASITGSL-SSSIATASVTGSPTSSVTAVSS--TSSVEGTA 1108
Query: 535 STTRLYTTSASALSNCPHPPTVTLTT 612
S+T SA+ LS+ + T+T+
Sbjct: 1109 SSTIAAAASAATLSSDAASGSSTVTS 1134
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = +3
Query: 186 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDC 317
RP +F G++ G + E D ++ + + ESCDC
Sbjct: 955 RPSRLIF-YDNCGDSSGAGLCNKAYEHTDELITMAIERIESCDC 997
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 6.6
Identities = 22/78 (28%), Positives = 34/78 (43%)
Frame = +1
Query: 346 SVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQTK 525
S A P SSS S STP S + S SS+ + S ++ KT +
Sbjct: 145 STATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISSADAKTVSA 204
Query: 526 PTASTTRLYTTSASALSN 579
+ ST ++TS ++ S+
Sbjct: 205 SSNSTISGFSTSTTSASS 222
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 223 PAPDCPKTKLSGRKICPKGPERTESMVPGSKS 128
P+ PK L R I P GPE + + GS S
Sbjct: 20 PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 448 PKYQTLSSNHTMRLSQFTS*LKTQTKPTASTTRLYTTSASALSNCPH 588
PK T H +S T +K+ S+TRL + S S PH
Sbjct: 664 PKTNTEGLMHAQSVSPITQAMKSANVLEGSSTRLNSYEPSVSSAYPH 710
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = -2
Query: 251 CVVSLGPV-VAGAGLS--EDEVVRTEDLSER--SGADRVHGAGLQVDENGAGHV 105
C V G + V GA LS + E++R + +GAD+ G ++V +G GHV
Sbjct: 19 CKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHV 72
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 325 ASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES 420
A+N+H+ SVAA PS+ V +T T S
Sbjct: 172 AANVHVLSVAASPNPSTPSNGPAPVSTTATPS 203
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 8.8
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Frame = +1
Query: 307 LAIAYR-ASNLHIPSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTM 483
++ AY+ + L P++ A P+SS ++ T + HT PK T +S H M
Sbjct: 663 ISFAYQHGTPLATPTMRANSFNSYPASSAEPIRRPATTTVGHTPNLYSPKTNTYNSRH-M 721
Query: 484 RLSQFTS*LKT-QTKPTASTTRLYTTSASALSNCPHPPT 597
S + P+ YT ++ L N PT
Sbjct: 722 AYEMTKSHINVISPGPSLQVNAPYTPTSGELGNKVSNPT 760
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = -2
Query: 251 CVVSLGPV-VAGAGLS--EDEVVRTEDLSER--SGADRVHGAGLQVDENGAGHV 105
C V G + V GA LS + E++R + +GAD+ G ++V +G GHV
Sbjct: 19 CKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHV 72
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 328 SNLHIPSVAAPGPVWAPSSSQRSVKSTPTE 417
S +H S A PGP+ PS+ ST E
Sbjct: 241 SPMHTYSSAVPGPISVPSAPYGRASSTIAE 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,445
Number of Sequences: 5004
Number of extensions: 54739
Number of successful extensions: 244
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -