Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0933
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.5  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   7.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.6  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 267 VDSVLDVVRKESESCDCLQG 326
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 61  WSASMYTTMKPPAASTCPAPFSSTWSPAPWTL 156
           W  S+ T M+   A+ C A +       PW L
Sbjct: 35  WRDSLPTKMRELNATACAALYERVEWSGPWIL 66


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 513 FQLAGELRESHCM 475
           F   G +RESHCM
Sbjct: 68  FGCCGAIRESHCM 80


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 69  CAPTASQSPHGRHRWGRCRARQS 1
           C+P   Q+P  R   GR R R++
Sbjct: 392 CSPPPRQTPPSRKESGRRRRRRT 414


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 413 QNHEHILSSPLAQSIRHCRRTIQCDSLSSPAS*KHRRNLLHRQRG 547
           Q H+ +++SPL+Q  +   +     +L SP      R+   R+RG
Sbjct: 230 QQHQGVVTSPLSQQQQAAPQGAASANLPSPLY-PWMRSQFERKRG 273


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 15/60 (25%), Positives = 22/60 (36%)
 Frame = -2

Query: 206 EDEVVRTEDLSERSGADRVHGAGLQVDENGAGHVLAAGGFIVVYIDALQLQVRVPMVGTG 27
           E+  +R +++    G D     G   DE+ AG   A+    V    A          GTG
Sbjct: 178 EERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTTTGATTTLPAASATGTG 237


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 112 PAPFSSTWSPAPWTLSA 162
           P  F S W P P+ L+A
Sbjct: 65  PEFFDSLWQPDPYFLNA 81


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 393 IREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVEN 515
           +R      I + + ++ +PKVS+       ATLS  +++ N
Sbjct: 538 VRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIHN 578


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,147
Number of Sequences: 438
Number of extensions: 4078
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)