BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0933 (618 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 24 1.4 AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 23 3.2 AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 prot... 23 3.2 DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 4.2 AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 22 4.2 AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 22 5.5 DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 7.3 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 21 9.6 >AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein protein. Length = 411 Score = 23.8 bits (49), Expect = 1.4 Identities = 7/20 (35%), Positives = 15/20 (75%) Frame = +3 Query: 267 VDSVLDVVRKESESCDCLQG 326 +DS+++++R ++CD L G Sbjct: 106 IDSIINIIRVRVDACDRLWG 125 >AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor protein. Length = 587 Score = 22.6 bits (46), Expect = 3.2 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = +1 Query: 61 WSASMYTTMKPPAASTCPAPFSSTWSPAPWTL 156 W S+ T M+ A+ C A + PW L Sbjct: 35 WRDSLPTKMRELNATACAALYERVEWSGPWIL 66 >AF274024-1|AAF90150.1| 232|Apis mellifera tetraspanin F139 protein. Length = 232 Score = 22.6 bits (46), Expect = 3.2 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -1 Query: 513 FQLAGELRESHCM 475 F G +RESHCM Sbjct: 68 FGCCGAIRESHCM 80 >DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel protein. Length = 463 Score = 22.2 bits (45), Expect = 4.2 Identities = 9/23 (39%), Positives = 13/23 (56%) Frame = -1 Query: 69 CAPTASQSPHGRHRWGRCRARQS 1 C+P Q+P R GR R R++ Sbjct: 392 CSPPPRQTPPSRKESGRRRRRRT 414 >AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein protein. Length = 352 Score = 22.2 bits (45), Expect = 4.2 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +2 Query: 413 QNHEHILSSPLAQSIRHCRRTIQCDSLSSPAS*KHRRNLLHRQRG 547 Q H+ +++SPL+Q + + +L SP R+ R+RG Sbjct: 230 QQHQGVVTSPLSQQQQAAPQGAASANLPSPLY-PWMRSQFERKRG 273 >AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. Length = 1598 Score = 21.8 bits (44), Expect = 5.5 Identities = 15/60 (25%), Positives = 22/60 (36%) Frame = -2 Query: 206 EDEVVRTEDLSERSGADRVHGAGLQVDENGAGHVLAAGGFIVVYIDALQLQVRVPMVGTG 27 E+ +R +++ G D G DE+ AG A+ V A GTG Sbjct: 178 EERRLRPDEIKVEVGEDEFANGGAARDESKAGSTDASTPATVTTTGATTTLPAASATGTG 237 >DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated ion channel subunit protein. Length = 391 Score = 21.4 bits (43), Expect = 7.3 Identities = 8/17 (47%), Positives = 10/17 (58%) Frame = +1 Query: 112 PAPFSSTWSPAPWTLSA 162 P F S W P P+ L+A Sbjct: 65 PEFFDSLWQPDPYFLNA 81 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 21.0 bits (42), Expect = 9.6 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = +3 Query: 393 IREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVEN 515 +R I + + ++ +PKVS+ ATLS +++ N Sbjct: 538 VRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIHN 578 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 183,147 Number of Sequences: 438 Number of extensions: 4078 Number of successful extensions: 10 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 10 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 18337950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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