Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0933
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 352 9e-98
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 349 1e-96
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 348 2e-96
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 346 6e-96
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 345 1e-95
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 345 1e-95
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 345 1e-95
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 343 6e-95
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 343 6e-95
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 183 1e-46
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 183 1e-46
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 182 2e-46
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 182 2e-46
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 180 5e-46
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 180 5e-46
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 179 2e-45
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 125 2e-29
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 124 4e-29
At2g45050.1 68415.m05608 zinc finger (GATA type) family protein ... 35 0.050
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 32 0.26
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 30 1.1
At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At1g20400.1 68414.m02544 myosin heavy chain-related 28 4.3
At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SD... 28 5.7
At2g24200.1 68415.m02891 cytosol aminopeptidase identical to cyt... 28 5.7
At4g38110.1 68417.m05382 expressed protein 27 7.5
At4g08380.1 68417.m01384 proline-rich extensin-like family prote... 27 7.5
At5g08770.1 68418.m01040 expressed protein 27 10.0
At2g45490.1 68415.m05658 protein kinase, putative contains prote... 27 10.0
At2g40290.2 68415.m04961 eukaryotic translation initiation facto... 27 10.0
At2g40290.1 68415.m04960 eukaryotic translation initiation facto... 27 10.0
At2g35670.1 68415.m04375 transcription factor, putative / fertil... 27 10.0
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 352 bits (866), Expect = 9e-98
Identities = 161/205 (78%), Positives = 178/205 (86%), Gaps = 1/205 (0%)
Frame = +3
Query: 6 DEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+YVPRA+L+DLEPGTMDS+RSGP+GQI
Sbjct: 26 DEHGVDPTGRYNGDSADLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQI 85
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE+E+CDCLQGFQ
Sbjct: 86 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTG 145
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DN
Sbjct: 146 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 205
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
EALYDICFRTLKLSTP++GDLNHL+
Sbjct: 206 EALYDICFRTLKLSTPSFGDLNHLI 230
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 349 bits (857), Expect = 1e-96
Identities = 161/205 (78%), Positives = 176/205 (85%), Gaps = 1/205 (0%)
Frame = +3
Query: 6 DEHGIDPTGAYHGDS-DLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
DEHGID TG Y GD+ DLQLERINVYYNEASGG+YVPRA+L+DLEPGTMDS+RSGPFGQI
Sbjct: 26 DEHGIDSTGRYSGDTADLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQI 85
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
FRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE+E+CDCLQGFQ
Sbjct: 86 FRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTG 145
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DN
Sbjct: 146 SGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDN 205
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
EALYDICFRTLKLSTP++GDLNHL+
Sbjct: 206 EALYDICFRTLKLSTPSFGDLNHLI 230
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 348 bits (855), Expect = 2e-96
Identities = 159/204 (77%), Positives = 176/204 (86%)
Frame = +3
Query: 6 DEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIF 185
DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+YVPRAIL+DLEPGTMDSVR+GP+GQIF
Sbjct: 26 DEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIF 85
Query: 186 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXX 365
RPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKE+E+CDCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGS 145
Query: 366 XXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 545
KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNE
Sbjct: 146 GMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE 205
Query: 546 ALYDICFRTLKLSTPTYGDLNHLV 617
ALYDICFRTLKL+TP++GDLNHL+
Sbjct: 206 ALYDICFRTLKLTTPSFGDLNHLI 229
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 346 bits (851), Expect = 6e-96
Identities = 159/203 (78%), Positives = 174/203 (85%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFR 188
EHGID TG Y GDS+LQLER+NVYYNEAS G+YVPRA+L+DLEPGTMDSVRSGP+GQIFR
Sbjct: 27 EHGIDQTGRYVGDSELQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFR 86
Query: 189 PDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXX 368
PDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ
Sbjct: 87 PDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSG 146
Query: 369 XXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 548
KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEA
Sbjct: 147 MGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEA 206
Query: 549 LYDICFRTLKLSTPTYGDLNHLV 617
LYDICFRTLKLSTP++GDLNHL+
Sbjct: 207 LYDICFRTLKLSTPSFGDLNHLI 229
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 345 bits (849), Expect = 1e-95
Identities = 158/203 (77%), Positives = 174/203 (85%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFR 188
EHGIDPTG Y GDSDLQLERINVYYNEAS G++VPRA+L+DLEPGTMDS+RSGP+GQ FR
Sbjct: 27 EHGIDPTGRYTGDSDLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFR 86
Query: 189 PDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXX 368
PDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ
Sbjct: 87 PDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSG 146
Query: 369 XXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 548
KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEA
Sbjct: 147 MGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEA 206
Query: 549 LYDICFRTLKLSTPTYGDLNHLV 617
LYDICFRTLKL+TP++GDLNHL+
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHLI 229
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 345 bits (849), Expect = 1e-95
Identities = 158/203 (77%), Positives = 174/203 (85%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFR 188
EHGIDPTG Y GDSDLQLERINVYYNEAS G++VPRA+L+DLEPGTMDS+RSGP+GQ FR
Sbjct: 27 EHGIDPTGRYTGDSDLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFR 86
Query: 189 PDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXX 368
PDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ
Sbjct: 87 PDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSG 146
Query: 369 XXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 548
KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEA
Sbjct: 147 MGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEA 206
Query: 549 LYDICFRTLKLSTPTYGDLNHLV 617
LYDICFRTLKL+TP++GDLNHL+
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHLI 229
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 345 bits (848), Expect = 1e-95
Identities = 159/203 (78%), Positives = 173/203 (85%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFR 188
EHGID TG GD+DLQLERINVY+NEASGGKYVPRA+L+DLEPGTMDS+RSGPFGQIFR
Sbjct: 27 EHGIDQTGQSCGDTDLQLERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFR 86
Query: 189 PDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXX 368
PDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ
Sbjct: 87 PDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSG 146
Query: 369 XXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 548
KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEA
Sbjct: 147 MGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEA 206
Query: 549 LYDICFRTLKLSTPTYGDLNHLV 617
LYDICFRTLKL+ PT+GDLNHL+
Sbjct: 207 LYDICFRTLKLANPTFGDLNHLI 229
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 343 bits (843), Expect = 6e-95
Identities = 159/204 (77%), Positives = 173/204 (84%)
Frame = +3
Query: 6 DEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIF 185
DEHGID TG Y GDS LQLERI+VY+NEASGGKYVPRA+L+DLEPGTMDS+RSGPFGQIF
Sbjct: 26 DEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIF 85
Query: 186 RPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXX 365
RPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+ DCLQGFQ
Sbjct: 86 RPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENSDCLQGFQVCHSLGGGTGS 145
Query: 366 XXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNE 545
KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNE
Sbjct: 146 GMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNE 205
Query: 546 ALYDICFRTLKLSTPTYGDLNHLV 617
ALYDICFRTLKL+ PT+GDLNHL+
Sbjct: 206 ALYDICFRTLKLANPTFGDLNHLI 229
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 343 bits (843), Expect = 6e-95
Identities = 156/203 (76%), Positives = 174/203 (85%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFR 188
EHGID TG Y G++DLQLER+NVYYNEAS G++VPRA+L+DLEPGTMDSVRSGP+GQIFR
Sbjct: 27 EHGIDSTGRYQGENDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFR 86
Query: 189 PDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXX 368
PDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVVRKE+E+CDCLQGFQ
Sbjct: 87 PDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSG 146
Query: 369 XXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 548
KIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEA
Sbjct: 147 MGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEA 206
Query: 549 LYDICFRTLKLSTPTYGDLNHLV 617
LYDICFRTLKL+TP++GDLNHL+
Sbjct: 207 LYDICFRTLKLTTPSFGDLNHLI 229
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 183 bits (445), Expect = 1e-46
Identities = 87/205 (42%), Positives = 125/205 (60%), Gaps = 2/205 (0%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
EHGI P G GD + + N +++E GK+VPRA+ VDLEP +D VR+G + Q+
Sbjct: 27 EHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 86
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
F P+ + G+ A NN+A+GHYT G E+VD LD +RK +++C LQGF
Sbjct: 87 FHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
EA+YDIC R+L + PTY +LN LV
Sbjct: 207 EAIYDICRRSLNIERPTYTNLNRLV 231
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 183 bits (445), Expect = 1e-46
Identities = 87/205 (42%), Positives = 125/205 (60%), Gaps = 2/205 (0%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
EHGI P G GD + + N +++E GK+VPRA+ VDLEP +D VR+G + Q+
Sbjct: 27 EHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 86
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
F P+ + G+ A NN+A+GHYT G E+VD LD +RK +++C LQGF
Sbjct: 87 FHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
EA+YDIC R+L + PTY +LN LV
Sbjct: 207 EAIYDICRRSLNIERPTYTNLNRLV 231
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 182 bits (442), Expect = 2e-46
Identities = 85/205 (41%), Positives = 124/205 (60%), Gaps = 2/205 (0%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
EHGI P G D+ + + + N +++E GK+VPRA+ VDLEP +D VR+G + Q+
Sbjct: 27 EHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 86
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
F P+ + G+ A NN+A+GHYT G E+VD LD VRK +++C LQGF
Sbjct: 87 FHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
++ +Y + +++ PSP+VS VVEPYN+ LS H L+E+TD +DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN 206
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
EA+YDIC R+L + PTY +LN L+
Sbjct: 207 EAIYDICRRSLDIERPTYTNLNRLI 231
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 182 bits (442), Expect = 2e-46
Identities = 85/205 (41%), Positives = 124/205 (60%), Gaps = 2/205 (0%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
EHGI P G D+ + + + N +++E GK+VPRA+ VDLEP +D VR+G + Q+
Sbjct: 27 EHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 86
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
F P+ + G+ A NN+A+GHYT G E+VD LD VRK +++C LQGF
Sbjct: 87 FHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
++ +Y + +++ PSP+VS VVEPYN+ LS H L+E+TD +DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDN 206
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
EA+YDIC R+L + PTY +LN L+
Sbjct: 207 EAIYDICRRSLDIERPTYTNLNRLI 231
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 180 bits (439), Expect = 5e-46
Identities = 86/205 (41%), Positives = 124/205 (60%), Gaps = 2/205 (0%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
EHGI P G D + + N +++E GK+VPRA+ VDLEP +D VR+G + Q+
Sbjct: 27 EHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 86
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
F P+ + G+ A NN+A+GHYT G E+VD LD +RK +++C LQGF
Sbjct: 87 FHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
EA+YDIC R+L + PTY +LN LV
Sbjct: 207 EAIYDICRRSLSIERPTYTNLNRLV 231
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 180 bits (439), Expect = 5e-46
Identities = 86/205 (41%), Positives = 124/205 (60%), Gaps = 2/205 (0%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
EHGI P G D + + N +++E GK+VPRA+ VDLEP +D VR+G + Q+
Sbjct: 27 EHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQL 86
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
F P+ + G+ A NN+A+GHYT G E+VD LD +RK +++C LQGF
Sbjct: 87 FHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DN
Sbjct: 147 SGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDN 206
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
EA+YDIC R+L + PTY +LN LV
Sbjct: 207 EAIYDICRRSLSIERPTYTNLNRLV 231
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 179 bits (435), Expect = 2e-45
Identities = 82/205 (40%), Positives = 125/205 (60%), Gaps = 2/205 (0%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQL--ERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQI 182
EHGI P G DS + + N +++E S G++VPRA+ +DLEP +D VR+G + Q+
Sbjct: 27 EHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQL 86
Query: 183 FRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
F P+ + G+ A NN+A+GHYT G E+VD+ L+ +RK +++C LQGF
Sbjct: 87 FHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDN 542
++ ++ + +++ PSP+VS VVEPYN+ LS H L+E+TD +DN
Sbjct: 147 SGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDN 206
Query: 543 EALYDICFRTLKLSTPTYGDLNHLV 617
EA+YDIC R+L + PTY +LN L+
Sbjct: 207 EAIYDICRRSLDIERPTYSNLNRLI 231
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 125 bits (302), Expect = 2e-29
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 3/206 (1%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFR 188
EHGI G + +R +V++ +A Y+PRA+L+DLEP ++ +++G + ++
Sbjct: 28 EHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYN 87
Query: 189 PDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
+N GAGNNWA G Y +G + + ++D++ +E++ D L+GF
Sbjct: 88 HENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCID 539
+ + Y +++ TYSV P+ + SD VV+PYN+ L++ +L N D +D
Sbjct: 147 SGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLD 206
Query: 540 NEALYDICFRTLKLSTPTYGDLNHLV 617
N AL I L L+ PT+ N LV
Sbjct: 207 NTALNRIAVERLHLTNPTFAQTNSLV 232
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 124 bits (300), Expect = 4e-29
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 3/206 (1%)
Frame = +3
Query: 9 EHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQIFR 188
EHGI G + +R +V++ +A Y+PRA+L+DLEP ++ +++G + ++
Sbjct: 28 EHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYN 87
Query: 189 PDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQXXXXXXXXXX 362
+N GAGNNWA G Y +G + + ++D++ +E++ D L+GF
Sbjct: 88 HENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDMIDREADGSDSLEGFVLCHSIAGGTG 146
Query: 363 XXXXXXXXXKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCID 539
+ + Y +++ TYSV P+ + SD VV+PYN+ L++ +L N D +D
Sbjct: 147 SGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLD 206
Query: 540 NEALYDICFRTLKLSTPTYGDLNHLV 617
N AL I L L+ PT+ N LV
Sbjct: 207 NTALGRIAVERLHLTNPTFAQTNSLV 232
>At2g45050.1 68415.m05608 zinc finger (GATA type) family protein
identical to cDNA GATA transcription factor 2 GI:2959731
Length = 264
Score = 34.7 bits (76), Expect = 0.050
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +1
Query: 10 STASTPPVPTMGTLTCSWSASMYTTMKPPAASTCPAPFSSTWSPAP 147
S A P P GT+T + + + S PAPF+ TWSP P
Sbjct: 89 SFADFPANPLGGTMTSVKTETSFPGKPRSKRSRAPAPFAGTWSPMP 134
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 32.3 bits (70), Expect = 0.26
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +3
Query: 456 SDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLST 587
S+ ++ P ++++ +LV D TY + + ++ D C R +K+ST
Sbjct: 77 SNLLIPPLSSSMGSSKLVSLEDSTYTLPSPSVSDSCERLMKMST 120
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.3 bits (65), Expect = 1.1
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +3
Query: 264 LVDSVLDVVRKESESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 443
+++SV VVRKE+E+C+CLQ F RE D + Y V
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF--FVSGSFKVDSVEAKKKEENFRETLRDMANSKYEYVK 57
Query: 444 SPKVSDTVVEP 476
S ++ D V+ P
Sbjct: 58 SFELEDEVMLP 68
>At3g23280.2 68416.m02935 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 438
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 4 LTSTASTPPVPTMGTLTCSWSASMYTTMKPPAASTCPAPFSSTWSPAPWTLSAP 165
L + S PP P+ L +AS++TTM P+ + ++ S P + +AP
Sbjct: 258 LQAPPSAPPPPSEDGLAMGMNASLHTTMSDPSNLNHHSIGQASSSSGPSSSTAP 311
>At3g23280.1 68416.m02934 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 462
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 4 LTSTASTPPVPTMGTLTCSWSASMYTTMKPPAASTCPAPFSSTWSPAPWTLSAP 165
L + S PP P+ L +AS++TTM P+ + ++ S P + +AP
Sbjct: 282 LQAPPSAPPPPSEDGLAMGMNASLHTTMSDPSNLNHHSIGQASSSSGPSSSTAP 335
>At1g20400.1 68414.m02544 myosin heavy chain-related
Length = 944
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 212 LSEDEVVRTED-LSERSGADRVHGAGLQVDENGAGHVLAAGGFIVVYIDALQLQVRVPMV 36
LS+ RT D SERSGADR L D AG+ + + L+ ++ P+V
Sbjct: 151 LSDHRRSRTPDGSSERSGADRFRAESLDDDLVEAGYSSSGSSSRTSVVAELRRRISSPLV 210
>At3g05260.1 68416.m00574 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 289
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = +1
Query: 301 QNLAIAYRASNLHIPSVAAPGPVWAP----SSSQRSVKSTPTES*THTQ*SP---RPKYQ 459
+ LA+ + + VA PGPVW P S S+ ++K +E+ P P Y
Sbjct: 205 RGLALQLAPKGIRVNGVA-PGPVWTPLIPASFSEEAIKQFGSETPMKRAAQPVEVAPSYV 263
Query: 460 TLSSNH 477
L+ NH
Sbjct: 264 FLACNH 269
>At2g24200.1 68415.m02891 cytosol aminopeptidase identical to
cytosol aminopeptidase SP:P30184 from [Arabidopsis
thaliana]; contains Pfam profiles: PF00883 cytosol
aminopeptidase family catalytic domain, PF02789: cytosol
aminopeptidase family N-terminal domain
Length = 520
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = -2
Query: 278 DRVNELSTL---CVVSLGPVVAGAGLSEDEVVR-TEDLSERSG 162
D++ +L+TL CV++LG +AG DE+ + SERSG
Sbjct: 393 DKIVDLATLTGACVIALGTSMAGIYTPSDELAKEVIAASERSG 435
>At4g38110.1 68417.m05382 expressed protein
Length = 475
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/48 (22%), Positives = 28/48 (58%)
Frame = +2
Query: 443 LAQSIRHCRRTIQCDSLSSPAS*KHRRNLLHRQRGSIRHLLPHSQTVH 586
+ + + H +++ D ++PA+ K++R+L ++ ++ HLL + H
Sbjct: 347 VVKGVEHTLQSLHSDRETTPANFKYKRSLENQLTSTMLHLLSLVSSCH 394
>At4g08380.1 68417.m01384 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 437
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 76 YTTMKPPAASTCPAPFSSTWSPAPWTLSAP 165
YT PP A + P P + P P+ S+P
Sbjct: 380 YTYSPPPYAYSPPPPCPDVYKPPPYVYSSP 409
>At5g08770.1 68418.m01040 expressed protein
Length = 297
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 91 PPAASTCPAPFSSTWSPAPWTLSA 162
P S P+PFSS+ P+ W+ SA
Sbjct: 105 PSPESKSPSPFSSSSHPSTWSSSA 128
>At2g45490.1 68415.m05658 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to protein kinase
p46XlEg22 [Xenopus laevis] gi|609280|emb|CAA78914
Length = 288
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 501 QLVENTDETYCIDNEALYDICFRTLKLSTP 590
++VEN D Y +DN L +C+ L + P
Sbjct: 187 EMVENRDHDYAVDNWTLGILCYEFLYGNPP 216
>At2g40290.2 68415.m04961 eukaryotic translation initiation factor 2
subunit 1, putative / eIF-2A, putative / eIF-2-alpha,
putative similar to Swiss-Prot:P05198 eukaryotic
translation initiation factor 2 subunit 1 (Eukaryotic
translation initiation factor 2 alpha subunit)
(eIF-2-alpha) (EIF- 2alpha) (EIF-2A) [Homo sapiens]
Length = 241
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 462 TVVEPYNATLSVHQLVENTDETYCIDNEALY 554
T E YN + VH ++ + ET ID E LY
Sbjct: 101 TCEERYNKSKLVHSIMRHVAETLSIDLEDLY 131
>At2g40290.1 68415.m04960 eukaryotic translation initiation factor 2
subunit 1, putative / eIF-2A, putative / eIF-2-alpha,
putative similar to Swiss-Prot:P05198 eukaryotic
translation initiation factor 2 subunit 1 (Eukaryotic
translation initiation factor 2 alpha subunit)
(eIF-2-alpha) (EIF- 2alpha) (EIF-2A) [Homo sapiens]
Length = 344
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 462 TVVEPYNATLSVHQLVENTDETYCIDNEALY 554
T E YN + VH ++ + ET ID E LY
Sbjct: 101 TCEERYNKSKLVHSIMRHVAETLSIDLEDLY 131
>At2g35670.1 68415.m04375 transcription factor, putative /
fertilization-independent seed 2 protein (FIS2)
identical to GB:AF096095
Length = 632
Score = 27.1 bits (57), Expect = 10.0
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 343 PSVAAPGPVWAPSSSQRSVKSTPTES*THTQ*SPRPKYQTLSSNHTMRLSQFTS*LKTQT 522
P++A P + +V STP + S R + S R S+ TS + T T
Sbjct: 326 PAIAESSEPKVPHVNDENVSSTPRAHSSKKNKSTRKNVDNVPSPPKTRSSKKTSDILTTT 385
Query: 523 KPT 531
+PT
Sbjct: 386 QPT 388
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,547,692
Number of Sequences: 28952
Number of extensions: 331023
Number of successful extensions: 1161
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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