Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0932
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0143 + 15174605-15174725,15175252-15175682                       32   0.39 
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015           31   0.68 
02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468     29   2.7  
01_01_0227 + 1933247-1933699                                           29   4.8  
02_04_0590 - 24154366-24155742                                         28   6.3  
06_02_0225 + 13257655-13260693                                         28   8.4  
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137...    28   8.4  
01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148...    28   8.4  

>10_08_0143 + 15174605-15174725,15175252-15175682
          Length = 183

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +1

Query: 241 MNVKRFSPDEIKVTVK-NKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPGSKQE 399
           ++V  FS D +KV V+ +  + + G+    G  + +L  HF++RF LPPG+  +
Sbjct: 37  LDVTGFSKDHLKVQVEASGSLRISGERAVNGGGRHWL--HFLKRFDLPPGAADD 88


>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
          Length = 327

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
 Frame = +1

Query: 208 IIANDDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKE--------AGD--IKKFLTNH 357
           ++ +D ++ +  ++   S +E+KV V++  + + G+HK+        +GD   K+   + 
Sbjct: 137 VMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSS 196

Query: 358 FVQRFVLPPGSKQEEVRAIYKENGIL 435
           +  R  LP    + +VRA  K NG+L
Sbjct: 197 YDMRLALPDECDKSKVRAELK-NGVL 221


>02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468
          Length = 666

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 436 LIYRFLCKSLALLPVCCRAVKRISERNDSSRTSLCRRLPYAFLRP*CICF 287
           L+YR L K   LLPV   +V++I    ++  T  C  +P   L    +C+
Sbjct: 588 LVYR-LIKLALLLPVTKASVEKIFSEVNAIHTDFCELIPDEILNDFMVCY 636


>01_01_0227 + 1933247-1933699
          Length = 150

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 304 VEGKHKEAGDIKKFLTNHFVQRFVLPPGSKQEEVRAIYKENGILT 438
           V+GK+ E     +  +  F +RF LP G++ ++V A   +NG+LT
Sbjct: 87  VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSA-SMDNGVLT 130


>02_04_0590 - 24154366-24155742
          Length = 458

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 306 DRDVFVFHCYFDLIRTESLHVHVHFKFVVIC 214
           DRD   F    DL+RT  LHV  H    V+C
Sbjct: 61  DRDPECFAVLLDLLRTGGLHVPPHVADGVLC 91


>06_02_0225 + 13257655-13260693
          Length = 1012

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 369 SLNEMIRQELLYVAGFLMLSFDRDVFVFHC 280
           ++N M+R   +   G  ML+FD D ++++C
Sbjct: 473 AMNAMVRASAILSNGPFMLNFDCDHYIYNC 502


>02_04_0490 -
           23411742-23412944,23413071-23413595,23413666-23413747,
           23413841-23414050,23414371-23414523,23415335-23415447,
           23415476-23415622
          Length = 810

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -2

Query: 436 LIYRFLCKSLALLPVCCRAVKRISERNDSSRTSLCRRLPYAFLRP*CICF 287
           L+Y+ L K + +LPV    V+R      + +T LC ++   +L    IC+
Sbjct: 733 LVYQLL-KLVLVLPVATATVERCFSAMKNVKTYLCNKIGDEYLSDSLICY 781


>01_03_0242 +
           14113721-14113966,14114102-14114260,14114495-14114868,
           14114939-14115419,14115651-14116192,14116253-14116531,
           14116837-14116918,14116994-14117086,14117173-14117367
          Length = 816

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 509 QKPQQTVRTKLWLPQKSLRFQHPLLRR*KNWIWLRRQRTLAKSG 640
           +K  QT   K     K L  Q PL ++ +NW+W R    + + G
Sbjct: 193 EKKWQTTEEKFAAEDKPLIVQ-PLNKQTRNWVWARTSGQVTEEG 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,304,697
Number of Sequences: 37544
Number of extensions: 308081
Number of successful extensions: 561
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)