BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0932 (707 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_08_0143 + 15174605-15174725,15175252-15175682 32 0.39 03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 31 0.68 02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468 29 2.7 01_01_0227 + 1933247-1933699 29 4.8 02_04_0590 - 24154366-24155742 28 6.3 06_02_0225 + 13257655-13260693 28 8.4 02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137... 28 8.4 01_03_0242 + 14113721-14113966,14114102-14114260,14114495-141148... 28 8.4 >10_08_0143 + 15174605-15174725,15175252-15175682 Length = 183 Score = 32.3 bits (70), Expect = 0.39 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = +1 Query: 241 MNVKRFSPDEIKVTVK-NKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPGSKQE 399 ++V FS D +KV V+ + + + G+ G + +L HF++RF LPPG+ + Sbjct: 37 LDVTGFSKDHLKVQVEASGSLRISGERAVNGGGRHWL--HFLKRFDLPPGAADD 88 >03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 Length = 327 Score = 31.5 bits (68), Expect = 0.68 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 10/86 (11%) Frame = +1 Query: 208 IIANDDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKE--------AGD--IKKFLTNH 357 ++ +D ++ + ++ S +E+KV V++ + + G+HK+ +GD K+ + Sbjct: 137 VMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSS 196 Query: 358 FVQRFVLPPGSKQEEVRAIYKENGIL 435 + R LP + +VRA K NG+L Sbjct: 197 YDMRLALPDECDKSKVRAELK-NGVL 221 >02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468 Length = 666 Score = 29.5 bits (63), Expect = 2.7 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -2 Query: 436 LIYRFLCKSLALLPVCCRAVKRISERNDSSRTSLCRRLPYAFLRP*CICF 287 L+YR L K LLPV +V++I ++ T C +P L +C+ Sbjct: 588 LVYR-LIKLALLLPVTKASVEKIFSEVNAIHTDFCELIPDEILNDFMVCY 636 >01_01_0227 + 1933247-1933699 Length = 150 Score = 28.7 bits (61), Expect = 4.8 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +1 Query: 304 VEGKHKEAGDIKKFLTNHFVQRFVLPPGSKQEEVRAIYKENGILT 438 V+GK+ E + + F +RF LP G++ ++V A +NG+LT Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSA-SMDNGVLT 130 >02_04_0590 - 24154366-24155742 Length = 458 Score = 28.3 bits (60), Expect = 6.3 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = -3 Query: 306 DRDVFVFHCYFDLIRTESLHVHVHFKFVVIC 214 DRD F DL+RT LHV H V+C Sbjct: 61 DRDPECFAVLLDLLRTGGLHVPPHVADGVLC 91 >06_02_0225 + 13257655-13260693 Length = 1012 Score = 27.9 bits (59), Expect = 8.4 Identities = 10/30 (33%), Positives = 19/30 (63%) Frame = -3 Query: 369 SLNEMIRQELLYVAGFLMLSFDRDVFVFHC 280 ++N M+R + G ML+FD D ++++C Sbjct: 473 AMNAMVRASAILSNGPFMLNFDCDHYIYNC 502 >02_04_0490 - 23411742-23412944,23413071-23413595,23413666-23413747, 23413841-23414050,23414371-23414523,23415335-23415447, 23415476-23415622 Length = 810 Score = 27.9 bits (59), Expect = 8.4 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 436 LIYRFLCKSLALLPVCCRAVKRISERNDSSRTSLCRRLPYAFLRP*CICF 287 L+Y+ L K + +LPV V+R + +T LC ++ +L IC+ Sbjct: 733 LVYQLL-KLVLVLPVATATVERCFSAMKNVKTYLCNKIGDEYLSDSLICY 781 >01_03_0242 + 14113721-14113966,14114102-14114260,14114495-14114868, 14114939-14115419,14115651-14116192,14116253-14116531, 14116837-14116918,14116994-14117086,14117173-14117367 Length = 816 Score = 27.9 bits (59), Expect = 8.4 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +2 Query: 509 QKPQQTVRTKLWLPQKSLRFQHPLLRR*KNWIWLRRQRTLAKSG 640 +K QT K K L Q PL ++ +NW+W R + + G Sbjct: 193 EKKWQTTEEKFAAEDKPLIVQ-PLNKQTRNWVWARTSGQVTEEG 235 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.314 0.131 0.379 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,304,697 Number of Sequences: 37544 Number of extensions: 308081 Number of successful extensions: 561 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 550 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 561 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1827423340 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (22.0 bits)
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