Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0932
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    34   0.11 
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    31   0.57 
At1g19260.1 68414.m02396 hAT dimerisation domain-containing prot...    29   3.0  
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    29   4.0  
At3g02420.1 68416.m00229 expressed protein                             29   4.0  
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    29   4.0  
At1g08560.1 68414.m00949 syntaxin-related protein KNOLLE (KN) / ...    28   5.3  
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-...    28   7.0  
At4g31130.1 68417.m04419 expressed protein                             27   9.2  
At3g29765.1 68416.m03762 hAT dimerisation domain-containing prot...    27   9.2  
At2g14247.1 68415.m01591 Expressed protein                             27   9.2  

>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
 Frame = +1

Query: 265 DEIKVTVKNKYIT-VEGKHKEAGDIK-------KFLTNHFVQRFVLPPGSKQEEVRAIYK 420
           +E+KV V++K +  + G+  +  + K       +  +  F++RF LP  +K EEV+A   
Sbjct: 75  EEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKAT-M 133

Query: 421 ENGILT 438
           ENG+LT
Sbjct: 134 ENGVLT 139


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 22/86 (25%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
 Frame = +1

Query: 205 QIIANDDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHK---EAG--DIKKFLTN----H 357
           Q+   DD  ++   V   + +++K+TV +  +T++G HK   E G  +  ++ ++    +
Sbjct: 128 QVKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGY 187

Query: 358 FVQRFVLPPGSKQEEVRAIYKENGIL 435
           +     LP  +K E+++A  K NG+L
Sbjct: 188 YNTSLSLPDDAKVEDIKAELK-NGVL 212


>At1g19260.1 68414.m02396 hAT dimerisation domain-containing protein
          Length = 769

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 436 LIYRFLCKSLALLPVCCRAVKRISERNDSSRTSLCRRLPYAFLRP*CICF 287
           L+YR L  SL +LPV    V+R     +  +T+L  R+   FL    +CF
Sbjct: 693 LVYRLLKVSL-ILPVATATVERCFSAMNFVKTTLRNRIGDMFLSDCLVCF 741


>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +1

Query: 358 FVQRFVLPPGSKQEEVRAIYKENGILT 438
           F++RF LP  +K EEV+A   ENG+L+
Sbjct: 111 FMRRFRLPENAKVEEVKA-SMENGVLS 136


>At3g02420.1 68416.m00229 expressed protein
          Length = 348

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = -2

Query: 421 LCKSLALLPVCCRAVKRISE--RNDSSRTSLCRR 326
           LC   AL+P+ CRA++++++  R +  R+++ R+
Sbjct: 215 LCLKFALIPILCRALEQVAKFLRRNFGRSTIYRK 248


>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 358 FVQRFVLPPGSKQEEVRAIYKENGILT 438
           F +RF LP  +K EE++A   ENG+L+
Sbjct: 112 FTRRFRLPENAKMEEIKA-SMENGVLS 137


>At1g08560.1 68414.m00949 syntaxin-related protein KNOLLE (KN) /
           syntaxin 111 (SYP111) identical to SP|Q42374
           Syntaxin-related protein KNOLLE (Syntaxin 111)
           (AtSYP111) {Arabidopsis thaliana}; BAC F22O13 has a
           deletion of a cytosine at position 7887
          Length = 310

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 268 EIKVTVKNKYITVEGKHKEAGDIKKFLTNH 357
           E K TV+ +Y TV G+H     I+K +T++
Sbjct: 160 EYKETVERRYFTVTGEHANDEMIEKIITDN 189


>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
           Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
           thaliana]
          Length = 916

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 274 KVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPGSKQEEVRAIYK 420
           KVT  +KY T       +GD +K  T       + PP  K   ++ +YK
Sbjct: 347 KVTKDSKYSTSSKSSPSSGDGQKKWTTLVHNGVIFPPPYKPHGIKILYK 395


>At4g31130.1 68417.m04419 expressed protein
          Length = 195

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 329 PASLCFPSTVMYLFFTVTLISSGL 258
           P S+ F ST   +FF + LI+SGL
Sbjct: 84  PNSVLFKSTSFSVFFNIALITSGL 107


>At3g29765.1 68416.m03762 hAT dimerisation domain-containing protein
          Length = 536

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -2

Query: 436 LIYRFLCKSLALLPVCCRAVKRISERNDSSRTSLCRRLPYAFLRP*CICF 287
           L+YR L  SL +LPV    V R     +  +T+L  R    FL    +CF
Sbjct: 460 LVYRLLKLSL-ILPVATATVVRCFSAMNFVKTTLRNRFGDVFLSDCLVCF 508


>At2g14247.1 68415.m01591 Expressed protein
          Length = 78

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 70  HKVEDPFVALDKHVSNTLAYHYLWPWSQL 156
           HK ++  ++    V +T  + +LWPW  L
Sbjct: 17  HKAKNQSLSSPSSVKSTRVFGFLWPWKAL 45


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.131    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,207,008
Number of Sequences: 28952
Number of extensions: 251418
Number of successful extensions: 464
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)