Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0931
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30) 80 1e-15
SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10) 50 2e-06
SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24) 41 6e-04
SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17) 41 6e-04
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_36541| Best HMM Match : WD40 (HMM E-Value=0) 40 0.001
SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_6741| Best HMM Match : WD40 (HMM E-Value=0) 39 0.003
SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42) 39 0.003
SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18) 39 0.003
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 38 0.008
SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34) 37 0.011
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22) 35 0.043
SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10) 35 0.043
SB_39225| Best HMM Match : NIF (HMM E-Value=0) 35 0.043
SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14) 35 0.056
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.074
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.074
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 34 0.098
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.098
SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11) 33 0.17
SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19) 33 0.17
SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22) 33 0.23
SB_40185| Best HMM Match : WD40 (HMM E-Value=0) 33 0.23
SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42) 33 0.23
SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35) 32 0.30
SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09) 32 0.40
SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28) 32 0.40
SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18) 32 0.40
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19) 31 0.91
SB_35708| Best HMM Match : WD40 (HMM E-Value=1.2) 31 0.91
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.91
SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12) 30 1.2
SB_19792| Best HMM Match : SspH (HMM E-Value=6.6) 30 1.2
SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 30 1.6
SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05) 30 1.6
SB_50716| Best HMM Match : WD40 (HMM E-Value=0) 29 2.1
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45) 29 2.1
SB_35567| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_42943| Best HMM Match : WD40 (HMM E-Value=0) 29 2.8
SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21) 29 2.8
SB_18573| Best HMM Match : WD40 (HMM E-Value=1.5e-06) 29 2.8
SB_51840| Best HMM Match : WD40 (HMM E-Value=8.3e-07) 29 3.7
SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_10949| Best HMM Match : WD40 (HMM E-Value=3.1e-10) 29 3.7
SB_1661| Best HMM Match : WD40 (HMM E-Value=5e-13) 29 3.7
SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40) 28 4.9
SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30) 28 4.9
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 28 4.9
SB_26997| Best HMM Match : WD40 (HMM E-Value=1.3e-08) 28 4.9
SB_46201| Best HMM Match : WD40 (HMM E-Value=0) 28 4.9
SB_18945| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_3333| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_14705| Best HMM Match : WD40 (HMM E-Value=3.6e-20) 28 6.4
SB_14311| Best HMM Match : Beach (HMM E-Value=9.1e-13) 28 6.4
SB_9416| Best HMM Match : WD40 (HMM E-Value=0) 28 6.4
SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_34542| Best HMM Match : TFIIB (HMM E-Value=0.0037) 27 8.5
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 27 8.5
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 27 8.5
SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15) 27 8.5
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16) 27 8.5
SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7) 27 8.5
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25) 27 8.5
>SB_17334| Best HMM Match : WD40 (HMM E-Value=3.1e-30)
Length = 1292
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/62 (61%), Positives = 50/62 (80%)
Frame = +1
Query: 253 MNELDSLRQEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYA 432
M+EL+ LRQE+E LK IRDARK A DT+LAQ ++N++ +GRIQMRTRRTLRG L I +
Sbjct: 1 MSELEQLRQESEALKCQIRDARKIAADTTLAQVSANIDQVGRIQMRTRRTLRGGLDNICS 60
Query: 433 MH 438
++
Sbjct: 61 IY 62
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = +1
Query: 388 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 567
+T T GH + ++ ++++ VS + D +WD V S + A+
Sbjct: 104 QTISTYSGHTGDVMSLSLNPNNQSFVSGACDASAKLWDIRGGTCVQTFTGHESDINAVAF 163
Query: 568 APSG 579
PSG
Sbjct: 164 FPSG 167
>SB_26977| Best HMM Match : WD40 (HMM E-Value=1.9e-10)
Length = 345
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +1
Query: 337 SLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQ--DGKLIVWDSHT 510
++ + LE + M+ RR L+GH K+ +M W D R+LVS+SQ D ++WD T
Sbjct: 199 TVKDVSRKLESLQGCHMKVRRILKGHQGKVLSMDWSGDCRHLVSSSQGCDRAALIWDIRT 258
Query: 511 TNKVHAIPLRSS 546
V++ S+
Sbjct: 259 GRIVNSFASHSA 270
>SB_6763| Best HMM Match : WD40 (HMM E-Value=4.6e-24)
Length = 208
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIP 534
+LRGH+ +Y + W +D R + S S D L VWD T ++ +P
Sbjct: 96 SLRGHVNCVYQIAWSADCRLICSGSADSTLKVWDMKTKKLLYDLP 140
>SB_17106| Best HMM Match : FYVE (HMM E-Value=5e-17)
Length = 289
Score = 41.1 bits (92), Expect = 6e-04
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +1
Query: 382 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNK 519
Q T L+GH++K+ A+ + + S+ L+S +DG ++VWD K
Sbjct: 119 QQGTAFELQGHISKVQALCFAAHSKKLISCGEDGAIMVWDMRIKRK 164
>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1649
Score = 40.7 bits (91), Expect = 9e-04
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSG 579
TLRGH +Y + D + +S S+D + +WD + +V ++ +S + A P G
Sbjct: 869 TLRGHSETVYCVCCSPDDKFAISGSEDTMVKIWDLESAKEVRSLVGHTSDIFAVAVTPDG 928
Query: 580 S 582
S
Sbjct: 929 S 929
Score = 33.9 bits (74), Expect = 0.098
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSG 579
+L GH + + SD R LVSASQD L +W+ T V + S V +P
Sbjct: 827 SLDGHDGHVRGIAITSDGRRLVSASQDRTLRIWNLETFAHVSTLRGHSETVYCVCCSPDD 886
Query: 580 SY 585
+
Sbjct: 887 KF 888
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPS 576
RT+ G I + D++ +++ DG + VWD T +++ + + V T A +P
Sbjct: 700 RTIDGRSRTILGIAVTPDTKKIITGGADGSIRVWDYETGKELNKLLDHTKLVYTLALSPH 759
Query: 577 GSY 585
+
Sbjct: 760 ADF 762
Score = 31.1 bits (67), Expect = 0.69
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 358 NLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 504
NL P R + +L+ H + A+ + + R LVSA+QD I WD+
Sbjct: 1070 NLAPFSR-----KLSLKEHEYPVQALAFAEEGRCLVSAAQDNCFIAWDA 1113
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 573
L H +Y + + LVS + D + +WD T + VH + +WV P
Sbjct: 744 LLDHTKLVYTLALSPHADFLVSGAFDHTVKIWDMDTLSLVHTLKGHKNWVSGVLVTP 800
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPS 576
R+L GH + I+A+ D ++S+ D ++ VW + ++ ++ S V +P
Sbjct: 910 RSLVGHTSDIFAVAVTPDGSKVISSGDDTQVKVWSLESGEELASLHGHSESVRIVTVSPD 969
Query: 577 G 579
G
Sbjct: 970 G 970
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSG 579
TL+GH + + DS+ ++S+S D + +WD T V+++ V A G
Sbjct: 785 TLKGHKNWVSGVLVTPDSKRIISSSYDKTVKIWDVETCAFVNSLDGHDGHVRGIAITSDG 844
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 412 HLAKIYAMHWGSDSRNLVSASQDGKLIVWD 501
H + + + W D +L SAS D K+ WD
Sbjct: 1451 HDSGVRTLAWSPDGLSLYSASTDNKIAHWD 1480
>SB_36541| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1070
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +1
Query: 355 SNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIP 534
+N++ +++ + TL+GH + I+A+ D +VSAS+D L VW + + +
Sbjct: 442 NNIKVWDLVRLECQATLKGHTSLIWAIAVSRDDSVIVSASKDDLLKVWRTESWVCTQTLI 501
Query: 535 LRSSWVMTCAYAPSG 579
SSW+ A G
Sbjct: 502 GHSSWISCVAMTTDG 516
Score = 30.7 bits (66), Expect = 0.91
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 388 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 501
R LRGH + A+ +D R+LVS S+D + +WD
Sbjct: 665 RDGMVLRGHDKGVTALLIMNDCRHLVSGSKDSTIRLWD 702
>SB_3361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 406 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSG 579
+ H A + ++ + D ++L++AS D L VW H ++++ +WV ++P G
Sbjct: 25 KAHTATVRSVDFSGDGQSLLTASDDKSLKVWTVHRQKFLYSLNAHMNWVRCAKFSPDG 82
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSG 579
+L H+ + + D R +VS S D + +WD + + VH +V + + PSG
Sbjct: 65 SLNAHMNWVRCAKFSPDGRLIVSGSDDKTIKLWDRTSKDCVHTFYDPGGFVNSVEFHPSG 124
Query: 580 S 582
+
Sbjct: 125 T 125
>SB_22072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 504
+ LRGH+ +Y + W D L+S S D I+WD+
Sbjct: 174 KMLRGHIEDVYDLAWSPDGTQLLSGSVDNSAIIWDA 209
>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1803
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 573
R+L GH ++ ++ + + + LVS + D KL VWD + N + + + + CA+ P
Sbjct: 1258 RSLEGHEDRVTSLAFSKNGKRLVSVALDKKLKVWDVESGNLLDTLTGHDGYPVCCAWNP 1316
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGS 582
L GH + + + SD L S S+D + VWD K+ S + AY+ G
Sbjct: 1454 LGGHSDWVMDVAFSSDGALLTSGSRDRTVRVWDCAAAEKLKKARFHSERCWSVAYSDDGM 1513
Query: 583 Y 585
+
Sbjct: 1514 W 1514
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 510
L GH + + D R + S S+D + VWDS T
Sbjct: 1177 LSGHSKGVLTTCFSIDDRKIFSGSEDCTIRVWDSKT 1212
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSS-WVMT 558
+ GH ++I + + D L SA+ D + VWD + + H S W +T
Sbjct: 1713 MEGHESEIRVVSFSPDDSLLASAALDQTIRVWDLSSYTQHHVFYTASGVWALT 1765
>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
Length = 714
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSG 579
L GH + + +S+ L+S S D I+WD V + S V CA+ P G
Sbjct: 94 LEGHTGAVRVCRFSPNSQFLISGSADETFIIWDVLLKKPVRCVDKLESSVTACAFTPDG 152
>SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42)
Length = 198
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSG 579
L GH + + +S+ L+S S D I+WD V + S V CA+ P G
Sbjct: 94 LEGHTGAVRVCRFSPNSQFLISGSADETFIIWDVLLKKPVRCVDKLESSVTACAFTPDG 152
>SB_45927| Best HMM Match : WD40 (HMM E-Value=9e-18)
Length = 1764
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/77 (32%), Positives = 41/77 (53%)
Frame = +1
Query: 277 QEAETLKNAIRDARKAACDTSLAQATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSR 456
Q +E+L +RDA + C SL + + L P G + +TL GH +Y + +D
Sbjct: 1017 QLSESLAGLLRDALQP-CVPSLVPSRAFLTPPGG---QLTQTLVGHSKGVYGLAVTADGS 1072
Query: 457 NLVSASQDGKLIVWDSH 507
+VS S+DG + VW ++
Sbjct: 1073 CVVSGSEDGSVKVWSAN 1089
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 409 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSG 579
GH ++++ + D VS S D + VWDS T H + V C ++P G
Sbjct: 592 GHTQEVFSCSFSPDDTKAVSCSADRTVKVWDSKTGVCYHVYMAHTDIVRWCCFSPDG 648
Score = 36.7 bits (81), Expect = 0.014
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSG 579
T + H +Y + SDS +VS D + VWDS + ++ +I V CA++
Sbjct: 505 TAKVHCGAVYCCKFSSDSSKVVSCGTDNHVKVWDSQSGRQLLSISGHGDVVNCCAFSHDD 564
Query: 580 S 582
S
Sbjct: 565 S 565
Score = 36.7 bits (81), Expect = 0.014
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Frame = +1
Query: 241 RVLIMNELDS-LRQEAETLKNAIRDARKAACDTSLAQA--TSNLEPIGRIQMRTRRTLRG 411
R+LI D L E E + + I + ++A + + + R TL G
Sbjct: 823 RLLIFQGQDGVLTAEGEAMDSKIHSVTFSPRGEAIAVGCESGTISVFNLQEARVMYTLAG 882
Query: 412 HLAKIY-AMHWGSDSRNLVSASQDGKLIVWDSHTTN-KVHAIPLRSSWVMTC 561
H K+ M + +D+R +++AS DG L VWD+ T N + + +V+TC
Sbjct: 883 HTNKLRRCMFFNNDTR-ILTASLDGSLKVWDAKTGNLEFTCCHSSTDYVLTC 933
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/58 (20%), Positives = 27/58 (46%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 573
++ GH + + D ++S S D + +WD+ + V + V +C+++P
Sbjct: 547 SISGHGDVVNCCAFSHDDSRIISCSADQTVKIWDASSGEGVLCFVGHTQEVFSCSFSP 604
>SB_34659| Best HMM Match : WD40 (HMM E-Value=1.1e-34)
Length = 292
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +1
Query: 376 RIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVM 555
R + R L GH ++ + W D ++L S D KL+VW+ + + ++ V
Sbjct: 133 RSPTQLERRLVGHRQEVCGLKWSPDHQHLASGGNDNKLLVWNLSGSTPIQQYSEHTAAVK 192
Query: 556 TCAYAP 573
+++P
Sbjct: 193 AISWSP 198
>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
Length = 453
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 409 GHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 573
GH+ I+ + +D + L +AS DG + VWD T + VH+ P + ++AP
Sbjct: 367 GHVETIFDCKFKADDADMLATASFDGTVKVWDVDTLSGVHSSPGNEGIIYALSWAP 422
>SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)
Length = 291
Score = 35.1 bits (77), Expect = 0.043
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 409 GHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 573
GH+ I+ + +D + L +AS DG + VWD T + VH+ P + ++AP
Sbjct: 205 GHVETIFDCKFKADDADMLATASFDGTVKVWDVDTLSGVHSSPGNEGIIYALSWAP 260
>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
Length = 1772
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 409 GHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGSY 585
GH + I + H + SR L+S D LI+WD T + ++ V TC ++ G Y
Sbjct: 79 GHTSIITSCHPNTTSRKLISGGWDKTLIMWDVETGCALWQ-AVQEGIVTTCHFSSDGKY 136
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 561
+ +RGH + + + D +V+AS D + +WD+ + N++ +S + +C
Sbjct: 33 KVMRGHTDSVNSCRFCFDDAKIVTASHDKTIRLWDASSGNQLKVYTGHTSIITSC 87
>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
Length = 867
Score = 34.7 bits (76), Expect = 0.056
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 501
TL GH +++++ W +D + L + S+D KL ++D
Sbjct: 148 TLEGHNEQVFSLAWSADGKQLATFSRDKKLRIYD 181
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 34.3 bits (75), Expect = 0.074
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +1
Query: 388 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 525
+T + RGH + + + + +D+ +++SAS DG + +W+ +T H
Sbjct: 340 KTLKEFRGHTSFVNDVIFTADAHHIISASSDGTIKIWNIKSTECQH 385
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 424 IYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 561
+ + + DS L S QDGK+ VW T + S +TC
Sbjct: 267 VLCLTFSRDSEMLASGGQDGKIKVWKLQTGQCLRRFERAHSKGVTC 312
>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 34.3 bits (75), Expect = 0.074
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPS 576
+ L H +Y + + D R L S S D ++ +W + T N VH+ S + ++P
Sbjct: 327 QVLSKHHEPVYTISFSPDGRYLASGSFDKRVHIWSTQTGNLVHSFQ-GSGGIFEVQWSPR 385
Query: 577 G 579
G
Sbjct: 386 G 386
Score = 26.2 bits (55), Expect(2) = 0.71
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQD 480
++ RGH++++ A+ W L S S D
Sbjct: 264 KSFRGHMSEVNAIRWDPSGTLLASCSDD 291
Score = 23.4 bits (48), Expect(2) = 0.71
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +1
Query: 466 SASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGSY 585
SAS D + +WD + + V T +++P G Y
Sbjct: 308 SASYDTTVRLWDVERGGCLQVLSKHHEPVYTISFSPDGRY 347
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 33.9 bits (74), Expect = 0.098
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSG 579
L+GH K+ + W D ++S DG + W+ + + L+S + +P G
Sbjct: 270 LKGHNGKVRQVIWSQDDSKIISCGMDGAVYEWNVYNYKREGESVLKSCSYTSVTVSPDG 328
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 33.9 bits (74), Expect = 0.098
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +3
Query: 276 PGGGNP*KRY*RCEKSGMRHVAGPGHLEPGADRSHTDAHPTNLARSS 416
PGGG P R +RHV P HL G +S+TD + NL+ S
Sbjct: 1289 PGGGRPSPRPSSPRTGHVRHVTSPRHLS-GVSKSNTDYNLHNLSTGS 1334
>SB_44731| Best HMM Match : WD40 (HMM E-Value=1.1e-11)
Length = 256
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 501
R++RGH I+ M + D L S DG + VWD
Sbjct: 175 RSVRGHTDTIHTMSFSPDGTLLASGGMDGAVRVWD 209
>SB_38341| Best HMM Match : TFIID_90kDa (HMM E-Value=4.6e-19)
Length = 426
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQD 480
TLRGH +YA +GS+ + L+SAS+D
Sbjct: 345 TLRGHSGPVYATCFGSEGKILLSASED 371
>SB_34456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRN--LVSASQDGKLIVWDSHTTNKVHA-IPLRSSWVMTCAYA 570
TL GH ++ + + L S + DG L +WD + + V + + V +CA++
Sbjct: 38 TLAGHTTGVWTCAFNPERTGDILCSGADDGSLKLWDIRSNSVVMSLVGGHDDRVKSCAWS 97
Query: 571 PSGSY 585
P+G Y
Sbjct: 98 PNGEY 102
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 439 WGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 573
+ +D + L SAS D +I+ D T V+ + ++ V TCA+ P
Sbjct: 9 FNNDGKLLASASWDKFVIISDVPTGKPVNTLAGHTTGVWTCAFNP 53
>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 644
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 531
TL GH + + M + +VS S+DG L VWD+ T N +H +
Sbjct: 394 TLYGHTSTVRCMDMHEEV--VVSGSRDGTLRVWDTTTGNCLHVL 435
>SB_57808| Best HMM Match : WD40 (HMM E-Value=2.5e-22)
Length = 195
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGK--LIVWDSHTTN 516
+TLRGH A + + W LVS S+D + + +WD+ T N
Sbjct: 149 KTLRGHGADVKCIDWHPHKSLLVSGSKDSQQPIKLWDTRTGN 190
>SB_40185| Best HMM Match : WD40 (HMM E-Value=0)
Length = 503
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 501
L GH A + ++ + + R+L+S+ D +L+VWD
Sbjct: 265 LSGHKAAVQSLAFSRNGRHLISSGVDTRLLVWD 297
Score = 31.5 bits (68), Expect = 0.52
Identities = 19/76 (25%), Positives = 32/76 (42%)
Frame = +1
Query: 358 NLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPL 537
N P + R L GH ++A+ D++ L+S S+D + +W T + A
Sbjct: 64 NRIPFPEMTASESRRLVGHSGPVFAVSIDHDNKFLLSCSEDKTIRLWSLFTFTTLVAYRG 123
Query: 538 RSSWVMTCAYAPSGSY 585
+ V + P G Y
Sbjct: 124 HNYPVWDVQFCPRGHY 139
>SB_11169| Best HMM Match : WD40 (HMM E-Value=5.5001e-42)
Length = 383
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +1
Query: 397 RTLRGHLAKIY--AMHWGSDSRN--LVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCA 564
RTL GH + A WG + L +AS+DG +I+W + + + + V C
Sbjct: 87 RTLVGHEKPVTNCAFMWGPSLKTPILATASEDGDVILWHYDSGKRAARLAVHCKAVTDCV 146
Query: 565 YAPSG 579
+A G
Sbjct: 147 FAKDG 151
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC-AYAP 573
RTLRGH + + + D+R + S S D + +W ++ + + + C +AP
Sbjct: 182 RTLRGHQGAVNVVAFSLDNRYIFSGSDDKSIRIWSRESSKCENTLTDSLGGEVRCLRFAP 241
Query: 574 SG 579
G
Sbjct: 242 HG 243
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAY 567
TL GH I + G D + L + S D + +W+ T + + V CA+
Sbjct: 46 TLEGHKKAILNVEVGPDGKTLATCSADCTVGLWNITTGELLRTLVGHEKPVTNCAF 101
>SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 32.3 bits (70), Expect = 0.30
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +1
Query: 388 RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKV 522
R R TLRGH + ++ + S L+++S D L +WD+ T + V
Sbjct: 278 RCRYTLRGHADSVNSIVFLPYSNTLLTSSADKTLSLWDARTGDTV 322
>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
Length = 844
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/78 (23%), Positives = 29/78 (37%)
Frame = +1
Query: 349 ATSNLEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHA 528
+T + + Q R + L + YA+ DS+ S DG + VWD H V
Sbjct: 405 STLTIWDLASSQPRIKAELTSNAPACYALAMSPDSKVCFSCCSDGNIAVWDLHNQTLVRQ 464
Query: 529 IPLRSSWVMTCAYAPSGS 582
+ +P G+
Sbjct: 465 FQGHTDGASCIDISPDGT 482
>SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09)
Length = 743
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +1
Query: 412 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPL----RSSWVMTCAYAPS 576
H A I + W S LV+ +DG ++ W + ++ PL S + C Y S
Sbjct: 82 HKAAIKTIEWNSSGNKLVTGDEDGTVVGWKADQKGRLQQNPLFQHDLQSAITVCIYKSS 140
>SB_8844| Best HMM Match : WD40 (HMM E-Value=2.5e-28)
Length = 539
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 370 IGRIQM-RTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 501
I I+M R RT GH +I + + D R L+S+S D + WD
Sbjct: 437 IADIEMHRIVRTFTGHANRITDVSFSPDGRWLISSSMDSTIRTWD 481
>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 622
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = +1
Query: 382 QMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKV-HAIPLRSSWVMT 558
Q R TLR H + + W D L S S D + +W++ +V I + V
Sbjct: 77 QWRCVHTLRQHSGDVLDLAWSPDDSFLASGSVDNTVTIWNAQKFPEVIQIIKGHTGLVKG 136
Query: 559 CAYAPSGSY 585
+ P G Y
Sbjct: 137 VTWDPVGKY 145
>SB_5612| Best HMM Match : WD40 (HMM E-Value=4.4e-18)
Length = 736
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRN-LVSASQDGKLIVWDSHTTNKV 522
R L GH ++ A+ W + LV++S DG VWD T +
Sbjct: 16 RQLVGHCGRVTALSWSPHHPDRLVTSSYDGSAQVWDVETNQPI 58
>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 31.5 bits (68), Expect = 0.52
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 430 AMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 531
A +G + + +V+ S DG +WD +TTN + +
Sbjct: 654 ANFFGDNGQYIVAGSDDGSFFMWDRNTTNLIRVL 687
>SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKV 522
TL GH I ++ + DS+ L++AS DG + ++D + + ++
Sbjct: 143 TLEGHAMPIRSLTFSPDSQLLITASDDGHIKMYDVYPSKQL 183
Score = 31.1 bits (67), Expect = 0.69
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 427 YAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGSY 585
+ + + DS+ L + S GK+ + + K ++ R + M+ AY+P G Y
Sbjct: 68 WTVTFSPDSKILATGSHSGKVNLINLELGKKESSLDTRGKFTMSLAYSPDGHY 120
>SB_48711| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 406 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVH 525
+GH +I A+ +D + L S +D + +WD T+ +H
Sbjct: 111 KGHKEQILALAITTDGKYLASGGKDKLIRIWDPDTSKHIH 150
>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 475
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSD-SRNLVSASQDGKLIVWD 501
L+GH + Y + W + + NL+SAS D + +WD
Sbjct: 239 LKGHTKEGYGLSWNPNVNGNLLSASDDHTICLWD 272
>SB_19094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNL-VSASQDGKLIVWDS 504
RTL+GH + + ++L +SAS+DG +++WD+
Sbjct: 123 RTLKGHSDFVLGVDCSGTEKDLFLSASRDGSVVLWDT 159
>SB_40725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 30.7 bits (66), Expect = 0.91
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTT-NKVHAI 531
+L GH + + + + S +V+ SQ G L +WD K+HA+
Sbjct: 56 SLAGHTSPVECVQFNSGEDLVVAGSQSGTLKIWDLEAAKRKLHAL 100
>SB_38974| Best HMM Match : WD40 (HMM E-Value=1.1e-19)
Length = 584
Score = 30.7 bits (66), Expect = 0.91
Identities = 11/57 (19%), Positives = 24/57 (42%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAP 573
++ + + + W D + +V+ +D + VW H + SW+ A+ P
Sbjct: 312 MKSYFGGLTCVCWSPDGKYVVTGGEDDLITVWSFHELRVIARGQGHQSWISVVAFDP 368
>SB_35708| Best HMM Match : WD40 (HMM E-Value=1.2)
Length = 179
Score = 30.7 bits (66), Expect = 0.91
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 498
+TL GH + + W + L ++ Q G +IVW
Sbjct: 107 QTLEGHTGAVQVVTWNEQFQKLTTSDQYGLIIVW 140
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGS 582
L+GH + I +++ D + S S D + +WD + + AI S V + PSG+
Sbjct: 1143 LKGHSSHIMSVYAAKDDI-IASGSNDNTVRLWDLRSQRCIDAIATGDSCVSSVCVNPSGT 1201
>SB_53527| Best HMM Match : zf-C3HC4 (HMM E-Value=3.3e-12)
Length = 1290
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 361 LEPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIP 534
+ PI R Q + GH +++ +HW + + GK I H +VH IP
Sbjct: 863 VHPIHRAQRASSSHPTGHKGQVHPIHWAQRASSSHPPGTKGKFIPSTGH-KGQVHPIP 919
>SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)
Length = 244
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +1
Query: 241 RVLIMNELDSLRQEAETLKNAIRDARKAACDTSLAQA--TSNLEPIGRIQMRTRRTLRGH 414
R+ I + DS Q A T N + D++KA T A T+++ ++ T+
Sbjct: 14 RIYIQHVSDS--QTARTYTNHMNDSQKARIYTQHAARIYTNHVNDSQTARIYTQHVNYSQ 71
Query: 415 LAKIYAMHWGSDSRNLVSASQDGKL 489
A+IY H NLV+ SQ ++
Sbjct: 72 TARIYTQHAARIYTNLVNDSQTARI 96
>SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSH 507
TL H ++ + W D + L S D L +WD++
Sbjct: 286 TLDKHTQEVCGLKWSPDGKYLASGGNDNLLNIWDAN 321
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTN 516
L GH ++ M D + +VSA+ D L +W TT+
Sbjct: 423 LTGHSCRVLHMAMSPDGQTVVSAAADETLRLWKCFTTD 460
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 412 HLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGSY 585
H +I A+ + + + L++A++DG + VWD K+ I + V T A P GSY
Sbjct: 183 HSREITAVLFFNPLKYLITAARDGSIKVWDDTGNVKIIFIGHLKA-VNTLAIYPFGSY 239
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 309 RCEKSGMRHVAGPGHLEPGA 368
RCE SG H A P H PGA
Sbjct: 489 RCELSGATHFAFPAHFTPGA 508
>SB_9467| Best HMM Match : PAN (HMM E-Value=3e-05)
Length = 168
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +3
Query: 309 RCEKSGMRHVAGPGHLEPGA 368
RCE SG H A P H PGA
Sbjct: 70 RCELSGATHFAFPAHFTPGA 89
>SB_50716| Best HMM Match : WD40 (HMM E-Value=0)
Length = 494
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 501
R L GH + + + D++ +VS + DGK+ VWD
Sbjct: 387 RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 419
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 394 RRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 531
RR L GH A + + + D + +VSAS D + VW + T V +
Sbjct: 306 RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTL 349
>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
Length = 426
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 406 RGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 501
+ H IY + W DS+ +++AS D +W+
Sbjct: 202 KAHSGGIYGLSWSDDSKFILTASGDKSCKIWN 233
>SB_35567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 169 RCVACCTCAARGCRSSVPRELCV 237
RC A C C GCR + RE V
Sbjct: 42 RCTAPCVCTQEGCRKTFVREAAV 64
>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 561
L GH I A+ G+++ NL SAS D + VW + +H + +S C
Sbjct: 207 LSGHEGSIRAL--GANTANLFSASADCTIRVWKRDSFELMHTLEQKSPISSLC 257
>SB_42943| Best HMM Match : WD40 (HMM E-Value=0)
Length = 273
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 382 QMRTRRTLRGHLAKIYAMHWG-SDSRNLVSASQDGKLIVWD 501
Q+ R TL+GH + + S+ ++S+S+D KLIVW+
Sbjct: 41 QLSLRGTLKGHNGWVTQIATNPSNPDTILSSSRDKKLIVWE 81
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/38 (26%), Positives = 23/38 (60%)
Frame = +1
Query: 391 TRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDS 504
T R GH + ++ + +D+R +VS ++D + +W++
Sbjct: 134 TTRRFVGHTKDVLSVAFSADNRQIVSGARDHHIKLWNT 171
>SB_32324| Best HMM Match : WD40 (HMM E-Value=6.4e-21)
Length = 123
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 382 QMRTRRTLRGHLAKIYAMHWG-SDSRNLVSASQDGKLIVWD 501
Q+ R TL+GH + + S+ ++S+S+D KLIVW+
Sbjct: 4 QLSLRGTLKGHNGWVTQIATNPSNPDTILSSSRDKKLIVWE 44
>SB_18573| Best HMM Match : WD40 (HMM E-Value=1.5e-06)
Length = 76
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 510
TLRGH Y + D +V+ D ++VW +HT
Sbjct: 28 TLRGHSEVAYCCQF--DDEKVVTGGGDNLIMVWSAHT 62
>SB_51840| Best HMM Match : WD40 (HMM E-Value=8.3e-07)
Length = 242
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 418 AKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWV 552
+K+ A WG + LV+ ++G+L WD + NK+ ++ S +
Sbjct: 13 SKVTAGLWGPLDQFLVTGHENGELCQWDVKSGNKLISVQEHSKQI 57
>SB_8327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +1
Query: 394 RRTLRGHLAKIYAMHWGSDSR-NLVSASQDGKLIVWD 501
+ TL+GH +++ + + + ++S S DG++I+WD
Sbjct: 55 QHTLKGHTSQVVGISADTTNELQVISCSGDGQVIMWD 91
>SB_10949| Best HMM Match : WD40 (HMM E-Value=3.1e-10)
Length = 193
Score = 28.7 bits (61), Expect = 3.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 439 WGSDSRNLVSASQDGKLIVWDSHTTN 516
W + RN+++ S DG + +WD N
Sbjct: 47 WNKEDRNVLATSHDGDVRIWDLRKGN 72
>SB_1661| Best HMM Match : WD40 (HMM E-Value=5e-13)
Length = 106
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 510
TL GH A+I + + S L++ S D + VWD+ +
Sbjct: 18 TLSGHSAEIISCAFNSTGTQLLTGSFDHTVSVWDTRS 54
>SB_39595| Best HMM Match : WD40 (HMM E-Value=1.10001e-40)
Length = 260
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 466 SASQDGKLIVWDSHTTNKVHAIPLRSSWVMTC 561
S +D L VW ++ +V +P S W +TC
Sbjct: 218 SVGEDRTLRVWKGDSSPQVITLPATSIWAVTC 249
>SB_38040| Best HMM Match : F5_F8_type_C (HMM E-Value=8.4e-30)
Length = 351
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 309 RCEKSGMRHVAGPGHLEPGA 368
+C+ +G H A PGHL PGA
Sbjct: 97 QCQLNGDTHFAFPGHLIPGA 116
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2
Query: 209 RQPRAAHVQHATHRSFCQQCPFDRRSSDFRAISISPL--RLDNHFLAHF-VSFQYHHTKT 39
+Q R H Q A +S PF+ S DF + S + +L N ++ F + HH +
Sbjct: 572 KQKRPKHAQRAPMQSIQTTAPFELISLDFLHLEKSSVAEKLYNDYIMRFGFPLRIHHDQG 631
Query: 38 RIFHKFLSRN 9
+ F L ++
Sbjct: 632 KEFENDLHKH 641
>SB_26997| Best HMM Match : WD40 (HMM E-Value=1.3e-08)
Length = 175
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 498
L GH A + + W D L S +G +IVW
Sbjct: 136 LLGHSAPVLDVCWNYDESLLASCDTEGTVIVW 167
>SB_46201| Best HMM Match : WD40 (HMM E-Value=0)
Length = 292
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKV 522
++L H I AM SD + +V+ S+D +WD+ T + +
Sbjct: 26 KSLEHHEGGINAMCISSDGKTIVTGSEDKTGRLWDTRTEDTI 67
>SB_18945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -2
Query: 338 DVSHAAFLASLIAFLRVSASWRRLSSSFMINTRVTHSSRGTD--DRQPRAAHVQHATH 171
D +HA F + + + VSAS + + I+ R+ TD RQP A Q + H
Sbjct: 143 DATHAYFASVELGSVDVSASRNKSMINVTISNRLVKVKADTDLIQRQPTAPDAQDSKH 200
>SB_3333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 83
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 424 IYAMHWGSDSRNLVSASQDGKLIVW 498
+ +M W +DS N+++A QDG+ VW
Sbjct: 2 VTSMAW-NDSTNMLAALQDGRFTVW 25
>SB_14705| Best HMM Match : WD40 (HMM E-Value=3.6e-20)
Length = 215
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 448 DSRNLVSASQDGKLIVWDS-HTTNKVHAIPLRSSWVMTCAY 567
DSR+ ++ S D + +WD+ + + V ++ +SWV + Y
Sbjct: 122 DSRSFLTCSDDKTICLWDARNLKSNVFSLVGHTSWVKSIEY 162
>SB_14311| Best HMM Match : Beach (HMM E-Value=9.1e-13)
Length = 580
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 424 IYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKVHAI 531
I +H + +VSA QDG+ I+WD + + V ++
Sbjct: 367 ITCLHVCHEFSVVVSAGQDGRAIIWDLNRLSYVRSL 402
>SB_9416| Best HMM Match : WD40 (HMM E-Value=0)
Length = 700
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVW 498
L+GH+ + A+ SD + +S S DG + +W
Sbjct: 207 LKGHMDNVKAVVIDSDGQQCLSGSSDGTVRLW 238
>SB_43456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 397 RTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHT 510
R +GH ++ + D+ ++VSAS D + WD T
Sbjct: 117 RQFKGHSGPVHVTKFLQDNLHIVSASDDKLVNCWDIAT 154
>SB_34542| Best HMM Match : TFIIB (HMM E-Value=0.0037)
Length = 303
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 223 VEQTIDNRAPRTYNTQRTDPSVSNVPSIDAPAIFGRF 113
VE+T+++R+P YN PS VP ID P + F
Sbjct: 6 VERTVEDRSPPPYNI----PS-GPVPEIDVPTLMPEF 37
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +1
Query: 403 LRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSHTTNKV 522
L+GH + A+ + SD ++ D L +W+ H ++
Sbjct: 567 LQGHQGAVRAVRFNSDGNYCLTCGSDKILALWNPHKATRL 606
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 203 PRAAHVQHA-THRSFCQQCPFDRRSSDFRAISISPLRLDNHFLAHF 69
P A QHA +H++ Q PF + +D + + + +R DN HF
Sbjct: 913 PNMAGSQHALSHKT--PQAPFQKSVTDSQQVFMVTIRKDNSIEVHF 956
>SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15)
Length = 291
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 400 TLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWD 501
TL GH +++++ + R LV+ D +L VW+
Sbjct: 148 TLVGHSSEVWSFTLARNERRLVTGCGDSELRVWE 181
>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
Length = 657
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 148 GHC*QKDRCVACCTCAARGCRSSVPRELCVT-RVLIMNELDSLRQEAETLKNAIRDARKA 324
G+C +K C C + + RE V+ R + ++L+ L ++A+ L +I+D KA
Sbjct: 33 GNC-EKLTCRDCQLLEHKDHKYQFIRESAVSYREYLRSQLNRLYEQAQPLTESIKDVEKA 91
Query: 325 A 327
A
Sbjct: 92 A 92
>SB_23642| Best HMM Match : Neuromodulin (HMM E-Value=4.7)
Length = 286
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 203 PRAAHVQHA-THRSFCQQCPFDRRSSDFRAISISPLRLDNHFLAHF 69
P A QHA +H++ Q PF + +D + + + +R DN HF
Sbjct: 105 PNMAGSQHALSHKT--PQAPFQKSVTDSQQVFMVTIRKDNSIEVHF 148
>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
Length = 662
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 148 GHC*QKDRCVACCTCAARGCRSSVPRELCVT-RVLIMNELDSLRQEAETLKNAIRDARKA 324
G+C +K C C + + RE V+ R + ++L+ L ++A+ L +I+D KA
Sbjct: 196 GNC-EKLTCRDCQLLEHKDHKYQFIRESAVSYREYLRSQLNRLYEQAQPLTESIKDVEKA 254
Query: 325 A 327
A
Sbjct: 255 A 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,758,486
Number of Sequences: 59808
Number of extensions: 399526
Number of successful extensions: 1711
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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