Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0931
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.9  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    21   8.9  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    21   8.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 185 QHATHRSFCQQCPFDRRSSDF 123
           +H      C+ CP   +SSD+
Sbjct: 271 KHEAGSHSCEACPAHSKSSDY 291


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 361 GSRWPGPAT 335
           G RWPG AT
Sbjct: 90  GMRWPGDAT 98


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 145 KGHC*QKDRCVACCTCAARGCRSSVPRELCV 237
           +G C   +    C     R C + VP+ LC+
Sbjct: 34  RGKCPSNEIFSRCDGRCQRFCPNVVPKPLCI 64


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 145 KGHC*QKDRCVACCTCAARGCRSSVPRELCV 237
           +G C   +    C     R C + VP+ LC+
Sbjct: 34  RGKCPSNEIFSRCDGRCQRFCPNVVPKPLCI 64


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 353 VAWASDVSHAAFLASLIAFLRVSASWRRL 267
           VAWA  + H   L      L + A W  L
Sbjct: 246 VAWAKHIPHFTSLPLEDQVLLLRAGWNEL 274


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -2

Query: 353 VAWASDVSHAAFLASLIAFLRVSASWRRL 267
           VAWA  + H   L      L + A W  L
Sbjct: 246 VAWAKHIPHFTSLPLEDQVLLLRAGWNEL 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,972
Number of Sequences: 438
Number of extensions: 3085
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)