Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0929
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.072
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.13 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.22 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.89 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.89 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.89 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.3 bits (60), Expect = 0.072
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 125  PQRSTGTPSKDGTPSTPRAAPGPSRTPRTPREAPGTSPARALASSPIGTDIDMSSPLNY 301
            P  + G  SK+G P++   A G +    +P      SPA +  SSP  + +  +  +N+
Sbjct: 889  PASTPGCSSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPTNSLVGKTVAVNF 947


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 38  SKRPSSRASSEASTPRRTRSSQQVIVPETPQR-STGTPSKDGTPSTPRAAPGPSRTPRTP 214
           S++PSS A     +P ++        P+ PQR S   PS+   P  P  AP PS+ P   
Sbjct: 13  SQQPSSGAPGPQPSPHQS--------PQAPQRGSPPNPSQGPPPGGPPGAP-PSQNPSQM 63

Query: 215 REAPGT 232
             +P +
Sbjct: 64  MISPAS 69


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 259 SHRHRYRHELSS*LRHSKFSKHSSLAHERHHDPSTTE 369
           SH     H+ S+ L HS +     + H  HH P   E
Sbjct: 435 SHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPE 471


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 551 AVTNEPLYEQKLEEIHTLEEPF 616
           A+  +PL EQ LEE+  L+E +
Sbjct: 156 ALGEQPLTEQNLEELRDLKETY 177


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 551 AVTNEPLYEQKLEEIHTLEEPF 616
           A+  +PL EQ LEE+  L+E +
Sbjct: 194 ALGEQPLTEQNLEELRDLKETY 215


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +2

Query: 482 TDVAIAECREKFIKFIQRYVEPTAVTNEPLYEQKLEEIHTLEEPFLDVG 628
           TDV  A   E F+  +  +V  + V  EP        I  L   F+ VG
Sbjct: 27  TDVCSASNGELFLALLNFFVATSPVIGEPCQRVHSSRIPDLSYDFIVVG 75


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 592 DSHIGRAILRCGTVNMSEFSIPNY 663
           D  +G+     GT+N SEF+  NY
Sbjct: 42  DWSVGKKNSNSGTINESEFNDENY 65



 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 534 LWMNLMNFSLHSAMATSVPH 475
           +W  ++ FSL+S + T V +
Sbjct: 289 IWQQIVKFSLNSILKTVVAY 308


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 193 WTGSCSWCTW 164
           W+G CS C W
Sbjct: 357 WSGFCSQCIW 366


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 313  FSKHSSLAHERHHDPSTTEG*PPRSPYSSQCT 408
            F+K  S          T EG P + P+ + CT
Sbjct: 1060 FNKVGSGPMSEERRQHTAEGVPEQPPHDTTCT 1091


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,363
Number of Sequences: 438
Number of extensions: 4794
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)