Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0928
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955...    29   4.8  
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648     28   6.4  
03_02_1029 - 13488535-13493037                                         28   6.4  

>10_06_0008 -
           9533424-9533475,9533526-9535344,9535599-9536364,
           9551969-9552097
          Length = 921

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/78 (26%), Positives = 30/78 (38%)
 Frame = +1

Query: 469 DPHPPSGRARPRPDATDHYLTRXXXXXXXFTH*GLGHTDNPTKRSM*RRGKTSSKLARLL 648
           +P PP     P P  T+  LT+         +  L H  NP + +        SKLA  L
Sbjct: 337 NPPPPPPPPPPPPPDTNAILTQILAQQANMMNAFLHHLQNPPQHNAPPPPPQHSKLAEFL 396

Query: 649 LVLKP*HQPTTDPPVHLD 702
            +  P    + +P   LD
Sbjct: 397 RIRPPTFSSSNNPVDALD 414


>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
          Length = 857

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +1

Query: 469 DPHPPSGRARPRPDATDHYLTRXXXXXXXFTH*GLGHTDNPTKRSM*RRGKTSSKLARLL 648
           +P+P      P P  T+  LT+         +  L H  NP +++        SKLA  L
Sbjct: 302 NPNPQGNPPPPPPPDTNAILTQILAQQANMMNTFLHHLQNPPQQNAPPPPPQHSKLAEFL 361

Query: 649 LVLKP*HQPTTDPPVHLD 702
            +  P    + +P   LD
Sbjct: 362 RIRPPTFSSSNNPVDALD 379


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 20/78 (25%), Positives = 31/78 (39%)
 Frame = +1

Query: 469 DPHPPSGRARPRPDATDHYLTRXXXXXXXFTH*GLGHTDNPTKRSM*RRGKTSSKLARLL 648
           +P+P      P P  T+  LT+         +  L H  NP +++        SKLA  L
Sbjct: 20  NPNPQGNPPPPPPPDTNAILTQILAQQANMMNAFLHHLQNPPQQNAPPPPPQHSKLAEFL 79

Query: 649 LVLKP*HQPTTDPPVHLD 702
            +  P    + +P   LD
Sbjct: 80  RIRPPTFSSSNNPVDALD 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,602,825
Number of Sequences: 37544
Number of extensions: 258010
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)