Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0928
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 30   2.1  
SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  

>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 460 RPLDPHPPSGRARPRPDATDHY 525
           RPLDP+PP  R R  P   D Y
Sbjct: 216 RPLDPYPPRERYRDEPPPRDAY 237


>SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 585 IGMSQPSVGERERKRERASEI 523
           IGMSQ  + ERER+R+   EI
Sbjct: 210 IGMSQEEINERERQRKEQEEI 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,893,548
Number of Sequences: 59808
Number of extensions: 295478
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)