BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0928 (711 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 30 2.1 SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9 >SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) Length = 876 Score = 29.9 bits (64), Expect = 2.1 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +1 Query: 460 RPLDPHPPSGRARPRPDATDHY 525 RPLDP+PP R R P D Y Sbjct: 216 RPLDPYPPRERYRDEPPPRDAY 237 >SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 418 Score = 28.7 bits (61), Expect = 4.9 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 585 IGMSQPSVGERERKRERASEI 523 IGMSQ + ERER+R+ EI Sbjct: 210 IGMSQEEINERERQRKEQEEI 230 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,893,548 Number of Sequences: 59808 Number of extensions: 295478 Number of successful extensions: 557 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 530 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 557 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1877743452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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