Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0927
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 93 1e-20
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 51 9e-08
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 44 8e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 37 0.002
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 29 0.31
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 27 0.94
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 0.94
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 0.94
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 1.6
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 2.9
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 25 3.8
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 3.8
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera... 25 5.0
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 5.0
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 25 5.0
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 6.7
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 6.7
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 6.7
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 24 8.8
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 24 8.8
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 93.5 bits (222), Expect = 1e-20
Identities = 43/99 (43%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Frame = +2
Query: 89 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTGHFARDCKEE 265
S P + CYKC R GH AR+C G S G +R C+ C GH ARDC
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG 134
Query: 266 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 382
+CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 135 V-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 88.2 bits (209), Expect = 5e-19
Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE--EADRCYRCNG 292
CY C GH ARECT+G + C+ CN+TGH A +C E + CY C
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTGHKASECTEPQQEKTCYACGT 65
Query: 293 TGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES 403
GH+ R+C SP+ CY C + GHIAR+C G++S
Sbjct: 66 AGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQS 105
Score = 81.0 bits (191), Expect = 7e-17
Identities = 49/135 (36%), Positives = 62/135 (45%), Gaps = 28/135 (20%)
Frame = +2
Query: 113 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNRTGHFA 247
S+CY CN+TGH A ECT+ G + RD S RQ +C+KC R GH A
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIA 95
Query: 248 RDCKEEADR-------------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 388
RDC+ + CY C GH AR+C CY+C K GH + C +
Sbjct: 96 RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMG---VKCYSCGKIGHRSFECQQ 152
Query: 389 GGRESATQTCYNCNK 433
S Q CY CN+
Sbjct: 153 A---SDGQLCYKCNQ 164
Score = 79.0 bits (186), Expect = 3e-16
Identities = 30/78 (38%), Positives = 39/78 (50%)
Frame = +2
Query: 200 RQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN 379
R +C+ C GH AR+C + CY CN TGH A EC + E +CY C GH+ R+
Sbjct: 14 RPGPRCYNCGENGHQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 380 CPEGGRESATQTCYNCNK 433
CP CY C +
Sbjct: 73 CPSSPNPRQGAECYKCGR 90
Score = 31.9 bits (69), Expect = 0.044
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 101 AMSSSVCYKCNRTGHFARECT 163
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 50.8 bits (116), Expect = 9e-08
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Frame = +2
Query: 200 RQREK-CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECA-QSPDE-PSCYNCNKT 361
R R+K CF C + GH +DC E D C+RC H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 362 GHIARNCPE 388
GH++ C +
Sbjct: 133 GHLSGQCEQ 141
Score = 47.2 bits (107), Expect = 1e-06
Identities = 24/106 (22%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD----RCYRC 286
C+ C + GH ++C + ++D+ CF+C H C ++ +C+ C
Sbjct: 79 CFACRQQGHIVQDCPE----AKDNV-----SICFRCGSKEHSLNACSKKGPLKFAKCFIC 129
Query: 287 NGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 409
+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 130 HENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 37.9 bits (84), Expect = 7e-04
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +2
Query: 113 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE-------EAD 271
S+C++C H C++ G + + KCF C+ GH + C++ +
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSGQCEQNPKGLYPKGG 151
Query: 272 RCYRCNGTGHIARECAQ 322
C C+ H+A++C Q
Sbjct: 152 CCKFCSSVHHLAKDCDQ 168
Score = 31.1 bits (67), Expect = 0.077
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +2
Query: 308 RECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 427
R Q + C+ C + GHI ++CPE + C+ C
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRC 105
Score = 30.3 bits (65), Expect = 0.13
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 89 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE 262
SK + + C+ C+ GH + +C Q G + C C+ H A+DC +
Sbjct: 116 SKKGPLKFAKCFICHENGHLSGQCEQ-----NPKGLYPKGGCCKFCSSVHHLAKDCDQ 168
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 44.4 bits (100), Expect = 8e-06
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADRCYRCNGTG-HIARECAQSPDEPSCYNCNKTGHIARNCPEG 391
C C GH ++DC C C HI+ C P C NC GHIA C E
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE- 142
Query: 392 GRESATQTCYNCN 430
R+ + C C+
Sbjct: 143 PRKRGPRVCRTCH 155
Score = 39.1 bits (87), Expect = 3e-04
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Frame = +2
Query: 110 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 271
S VC+ C GH +++C T G + S +KC C GH A C E
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLGHIAARCSEPRK 145
Query: 272 R----CYRCNGTGHIAREC 316
R C C+ H + C
Sbjct: 146 RGPRVCRTCHTDTHTSSTC 164
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 36.7 bits (81), Expect = 0.002
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 337
+ + C C GH DC E + C C GHIAR+C +P
Sbjct: 307 ENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 35.5 bits (78), Expect = 0.004
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCP 385
+E C C GH +C + + C +C GHIAR+CP
Sbjct: 306 DENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 28.3 bits (60), Expect = 0.54
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +2
Query: 341 CYNCNKTGHIARNCPEGGRESATQTCYNC 427
C NC GH +CPE + C +C
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHC 339
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 256
+ VC C GH +C + R + + C C GH ARDC
Sbjct: 308 NQVCQNCGNVGHRRFDCPE-----RIN--HTMNIVCRHCGSIGHIARDC 349
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 29.1 bits (62), Expect = 0.31
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Frame = +2
Query: 95 PIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFAR-DCKEEAD 271
P A +V K N GH E G V +S + K + +R G F+R +
Sbjct: 384 PKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSS 443
Query: 272 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 415
R + + H +PD P+ + ++ G+++ T+T
Sbjct: 444 RMKKGSKAKH-----EDAPDVPAIPHAYIADSSTKSSYRNGKKTPTRT 486
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 0.94
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 197 NRQREKCFKCNRTGHFARDCKEEA 268
+RQ KC +C RT + +++C+ +A
Sbjct: 492 SRQFAKCRRCRRTKYCSKECQHQA 515
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 0.94
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 113 SVCYKCNRTGHFAREC 160
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 239 HFARDCKEEADRCYRCNGTGHIAREC 316
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 5.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 215 CFKCNRTGHFARDCK 259
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 0.94
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 113 SVCYKCNRTGHFAREC 160
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 1.2
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +2
Query: 239 HFARDCKEEADRCYRCNGTGHIAREC 316
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 25.0 bits (52), Expect = 5.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 215 CFKCNRTGHFARDCK 259
C+KC + H R+CK
Sbjct: 1806 CYKCGKADHNLRECK 1820
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADRCY----RCNGTGHIARECAQSPDEPS 340
C++C + GH+ + C AD Y R T I R ++ + P+
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDGKPRVKRTTGIPRSFLKNVERPA 230
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +2
Query: 308 RECAQSPDEPS-----CYNCNKTGHIARNCP 385
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 3.8
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +2
Query: 116 VCYKCNRTGHFAREC 160
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 2.9
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +2
Query: 320 QSPDEPSCYNCNKTGHIARN--CPEGGR 397
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 207 VRSASSATAQDTLRGIARKRLTVA 278
VRSA S+ Q T R +A+ +TVA
Sbjct: 50 VRSARSSMEQPTFRPVAKNSVTVA 73
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 425 SYSRSASQTPAPPRDSSVRCGPSCCSCN 342
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.0 bits (52), Expect = 5.0
Identities = 17/77 (22%), Positives = 28/77 (36%)
Frame = +2
Query: 185 DSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTG 364
D +E KC+ T F ++C E+ D N G E + S +
Sbjct: 87 DQNSELSQENLTKCDTTHDFEKNCSEKTDSTSADNIAGFTILEALSATGLRSIRYAKELP 146
Query: 365 HIARNCPEGGRESATQT 415
++ R E+A +T
Sbjct: 147 NVKRILANDLLENAVKT 163
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 414 VCVADSRPPSGQFRAMWP 361
V ++D RPP + RA WP
Sbjct: 302 VSISDYRPPKKRKRAAWP 319
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.0 bits (52), Expect = 5.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +2
Query: 194 FNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 292
F CFKC + F K+E Y C+G
Sbjct: 257 FAEDLSMCFKCVKKIQFKTKIKDELYAVYFCSG 289
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 6.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 58 LH*CLKCSRIFKTDRN 105
LH C+ C IF DRN
Sbjct: 425 LHWCINCRSIFSGDRN 440
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/60 (23%), Positives = 23/60 (38%)
Frame = -1
Query: 434 TCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLPC 255
+CCS + + + P S CCS T+ + ++ CSNG+ C
Sbjct: 238 SCCSQEKKSCCSSKKPSCCSQE-KKGCCSTEKTSCCSQEKKSCCTSEKPSCCSNGKSTVC 296
Score = 24.2 bits (50), Expect = 8.8
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 386 RDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLPCNPSQSVLCGCT 222
+DSS PSCCS + S + + C+Q + C + + C + C CT
Sbjct: 229 KDSSPSEKPSCCSQEKKSCCSS-KKPSCCSQEKKGCCSTEKTSCCSQEKKSC-CT 281
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 24.6 bits (51), Expect = 6.7
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 158 IRARNARSGCTCSKRLNSLRSVLKILEHLRH*CNDRSTINYPMNLQI 18
+R+R S KR + L+ V LEHL+H + ++N + ++I
Sbjct: 411 LRSRVDISESKLKKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRI 457
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 416 RSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCR 288
++ S AP +V+ G + + + R RT+ C CR
Sbjct: 8 KTGSNNSAPVTGKTVQSGNALNNSGLVKRQARKRTKTGCLTCR 50
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Frame = +2
Query: 188 SGFNRQREKCFKCNRTGHFARD------CKEEADRCYRCN 289
+GF + KC CN HF D C+E+ +RCY C+
Sbjct: 239 TGF-KGHPKCEFCNT--HFYDDDELFKHCREKHERCYICD 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,887
Number of Sequences: 5004
Number of extensions: 28713
Number of successful extensions: 153
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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