Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0927
(434 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 88 3e-18
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 63 7e-11
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 63 7e-11
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 60 5e-10
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 59 1e-09
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 59 1e-09
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 59 1e-09
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 56 1e-08
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 56 1e-08
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 56 1e-08
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 40 0.001
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 40 0.001
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 40 0.001
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 38 0.002
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 38 0.002
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 36 0.013
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 36 0.013
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 36 0.017
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 36 0.017
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 36 0.017
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 36 0.017
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 36 0.017
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 35 0.022
Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical pr... 34 0.039
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 34 0.051
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 32 0.21
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 0.27
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 31 0.36
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 30 0.63
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 30 0.63
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 30 0.83
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 30 0.83
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 30 0.83
AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical... 29 1.1
U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 29 1.9
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 29 1.9
AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical ... 29 1.9
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 29 1.9
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 29 1.9
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z83104-1|CAB54204.1| 573|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical p... 27 5.9
U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family ... 27 5.9
U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family ... 27 5.9
AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical ... 27 5.9
AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effe... 27 5.9
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 27 5.9
AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical... 27 5.9
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical pr... 27 7.8
U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile (un... 27 7.8
U28741-4|AAA68328.1| 747|Caenorhabditis elegans Hypothetical pr... 27 7.8
M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein ( C.ele... 27 7.8
AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical ... 27 7.8
AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical ... 27 7.8
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 87.8 bits (208), Expect = 3e-18
Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 22/113 (19%)
Frame = +2
Query: 113 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 265
S CY C TGHF+R+C +GG G C+ C GH++RDC
Sbjct: 35 STCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGY 94
Query: 266 -----------ADRCYRCNGTGHIARECAQ--SPDEPSCYNCNKTGHIARNCP 385
+CY C +GHI+REC + S +E CY C +TGHI+R+CP
Sbjct: 95 GGRGGEGRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCP 147
Score = 78.2 bits (184), Expect = 2e-15
Identities = 44/140 (31%), Positives = 58/140 (41%), Gaps = 30/140 (21%)
Frame = +2
Query: 104 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD---- 271
MS CYKC + GH +R C G G C+ C TGHF+RDC +
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNGESDGGRRG-GGGGSTCYNCQETGHFSRDCPKGGSGGGQ 59
Query: 272 --------RCYRCNGTGHIARECAQSPDE------------------PSCYNCNKTGHIA 373
CY C G GH +R+C + E CYNC ++GHI+
Sbjct: 60 RGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHIS 119
Query: 374 RNCPEGGRESATQTCYNCNK 433
R C E G + + CY C +
Sbjct: 120 RECTESG-SAEEKRCYQCQE 138
Score = 53.2 bits (122), Expect = 8e-08
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 271
CY C R+GH +RECT+ G + + ++C++C TGH +RDC + +
Sbjct: 109 CYNCGRSGHISRECTESG--------SAEEKRCYQCQETGHISRDCPSQTN 151
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 63.3 bits (147), Expect = 7e-11
Identities = 37/109 (33%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE---EADRCYRCN 289
C+ C GH ++EC + V R C C + GHFA DC + C C
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 290 GTGHIARECAQSPDEP--SCYNCNKTGHIARNCP-EGGRESATQTCYNC 427
GH A +C Q P P C NC + GH A++C E R T+ C C
Sbjct: 623 IEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRC 670
Score = 47.6 bits (108), Expect = 4e-06
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR------CY 280
C C GHFA +C Q V R C C + GHFA+DC+ E R C
Sbjct: 618 CRNCGIEGHFAVDCDQPKV---------PRGPCRNCGQEGHFAKDCQNERVRMEPTEPCR 668
Query: 281 RCNGTGHIARECAQSPDE 334
RC GH EC P +
Sbjct: 669 RCAEEGHWGYECPTRPKD 686
Score = 40.3 bits (90), Expect = 6e-04
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 227 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPE 388
N+ G++ D E C+ C GHI++EC P P C NC + GH A +C +
Sbjct: 558 NQRGNW--DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ 610
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 341 CYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
C+NC + GHI++ C + + C NC +
Sbjct: 572 CHNCGEEGHISKECDK--PKVPRFPCRNCEQ 600
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 63.3 bits (147), Expect = 7e-11
Identities = 37/109 (33%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE---EADRCYRCN 289
C+ C GH ++EC + V R C C + GHFA DC + C C
Sbjct: 572 CHNCGEEGHISKECDKPKV---------PRFPCRNCEQLGHFASDCDQPRVPRGPCRNCG 622
Query: 290 GTGHIARECAQSPDEP--SCYNCNKTGHIARNCP-EGGRESATQTCYNC 427
GH A +C Q P P C NC + GH A++C E R T+ C C
Sbjct: 623 IEGHFAVDCDQ-PKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRC 670
Score = 47.6 bits (108), Expect = 4e-06
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR------CY 280
C C GHFA +C Q V R C C + GHFA+DC+ E R C
Sbjct: 618 CRNCGIEGHFAVDCDQPKV---------PRGPCRNCGQEGHFAKDCQNERVRMEPTEPCR 668
Query: 281 RCNGTGHIARECAQSPDE 334
RC GH EC P +
Sbjct: 669 RCAEEGHWGYECPTRPKD 686
Score = 40.3 bits (90), Expect = 6e-04
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 227 NRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--SCYNCNKTGHIARNCPE 388
N+ G++ D E C+ C GHI++EC P P C NC + GH A +C +
Sbjct: 558 NQRGNW--DGGERPRGCHNCGEEGHISKEC-DKPKVPRFPCRNCEQLGHFASDCDQ 610
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 341 CYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
C+NC + GHI++ C + + C NC +
Sbjct: 572 CHNCGEEGHISKECDK--PKVPRFPCRNCEQ 600
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 60.5 bits (140), Expect = 5e-10
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Frame = +2
Query: 104 MSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR--- 274
++ S C+ C GH +C + S D CFKC H +CK++ +
Sbjct: 226 ITGSACFHCREPGHRLADCPKRNSSSSDG-------VCFKCGSMEHSIHECKKKGVKGFP 278
Query: 275 ---CYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESA 406
C+ C GHI+R+C Q+ PD C C H+ R+CPE + A
Sbjct: 279 YATCFVCKQVGHISRDCHQNVNGVYPDGGCCNVCGANTHLRRDCPELAAQKA 330
Score = 34.3 bits (75), Expect = 0.039
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Frame = +2
Query: 167 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQ---SPDEP 337
G V D+ +R K + R G +D K C+ C GH +C + S +
Sbjct: 197 GKVTVADAMLLVKRWKTRETRRIGR--QDQKITGSACFHCREPGHRLADCPKRNSSSSDG 254
Query: 338 SCYNCNKTGHIARNCPEGG-RESATQTCYNCNK 433
C+ C H C + G + TC+ C +
Sbjct: 255 VCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQ 287
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 59.3 bits (137), Expect = 1e-09
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQG-----GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCY 280
VCY C + GH +R+C + G SGF + F F + + +C+
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 281 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 385
C G GH + EC + P C+NC + GH + CP
Sbjct: 457 NCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 46.4 bits (105), Expect = 9e-06
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 233 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 388
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 46.4 bits (105), Expect = 9e-06
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQ--------GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCKEE 265
VCY C + GH +R+C + G SGF F T F E
Sbjct: 283 VCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGE 342
Query: 266 A---DRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRESATQTCYNCN 430
+ + N G + Q E + C+NC + GH + +CPE +E + CYNC
Sbjct: 343 SGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ 402
Query: 431 K 433
+
Sbjct: 403 Q 403
Score = 46.4 bits (105), Expect = 9e-06
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 233 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 388
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 42.3 bits (95), Expect = 1e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 289
Score = 41.9 bits (94), Expect = 2e-04
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG-- 292
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 425
Query: 293 -----------TGHIARECAQSPDE--PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
G A + + C+NC GH + CPE R C+NC +
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR-----GCFNCGE 480
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 322
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 322
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 265
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 59.3 bits (137), Expect = 1e-09
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQG-----GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCY 280
VCY C + GH +R+C + G SGF + F F + + +C+
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 281 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 385
C G GH + EC + P C+NC + GH + CP
Sbjct: 457 NCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 46.4 bits (105), Expect = 9e-06
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 233 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 388
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 46.4 bits (105), Expect = 9e-06
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQ--------GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCKEE 265
VCY C + GH +R+C + G SGF F T F E
Sbjct: 283 VCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGE 342
Query: 266 A---DRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRESATQTCYNCN 430
+ + N G + Q E + C+NC + GH + +CPE +E + CYNC
Sbjct: 343 SGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ 402
Query: 431 K 433
+
Sbjct: 403 Q 403
Score = 46.4 bits (105), Expect = 9e-06
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 233 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 388
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 42.3 bits (95), Expect = 1e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 289
Score = 41.9 bits (94), Expect = 2e-04
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG-- 292
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 425
Query: 293 -----------TGHIARECAQSPDE--PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
G A + + C+NC GH + CPE R C+NC +
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR-----GCFNCGE 480
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 322
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 322
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 265
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 59.3 bits (137), Expect = 1e-09
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQG-----GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCY 280
VCY C + GH +R+C + G SGF + F F + + +C+
Sbjct: 397 VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCF 456
Query: 281 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 385
C G GH + EC + P C+NC + GH + CP
Sbjct: 457 NCKGEGHRSAECPEPP--RGCFNCGEQGHRSNECP 489
Score = 46.4 bits (105), Expect = 9e-06
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 233 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 388
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 245 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 46.4 bits (105), Expect = 9e-06
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQ--------GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCKEE 265
VCY C + GH +R+C + G SGF F T F E
Sbjct: 283 VCYNCQQPGHNSRDCPEERKPREGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGE 342
Query: 266 A---DRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRESATQTCYNCN 430
+ + N G + Q E + C+NC + GH + +CPE +E + CYNC
Sbjct: 343 SGFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQ 402
Query: 431 K 433
+
Sbjct: 403 Q 403
Score = 46.4 bits (105), Expect = 9e-06
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 233 TGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 388
+G +D E + C+ C GH + +C + E CYNC + GH +R+CPE
Sbjct: 359 SGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 42.3 bits (95), Expect = 1e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQ 289
Score = 41.9 bits (94), Expect = 2e-04
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 15/120 (12%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG-- 292
C+ C + GH + +C + R+ C+ C + GH +RDC EE NG
Sbjct: 373 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEERKPREGRNGFT 425
Query: 293 -----------TGHIARECAQSPDE--PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
G A + + C+NC GH + CPE R C+NC +
Sbjct: 426 SGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR-----GCFNCGE 480
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 322
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 39.5 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 322
+ CF C + GH + DC KE R CY C GH +R+C +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 36.7 bits (81), Expect = 0.007
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE 265
C+ C + GH + +C + R+ C+ C + GH +RDC EE
Sbjct: 259 CFNCQQPGHRSNDCPEPKK-------EREPRVCYNCQQPGHNSRDCPEE 300
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 55.6 bits (128), Expect = 1e-08
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQG--------GVVSRDSGF-NRQREKCFKCNRTGHFARDCKEEA 268
VCY C + GH +RECT+ G +GF N F G F +
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGF--GGDGGFGGGEERGP 241
Query: 269 DRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 385
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 242 MKCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 191 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 322
G + CF C + GH + DC KE R CY C GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 41.9 bits (94), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 388
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 38.7 bits (86), Expect = 0.002
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE-ADRCYRCNGT 295
C+ C + GH + +C + R+ C+ C + GH +R+C EE R R G
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEERKPREGRTGGF 212
Query: 296 GHIAR----------------ECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 427
G A + C+NC GH + CPE R C+NC
Sbjct: 213 GGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR-----GCFNC 267
Query: 428 NK 433
+
Sbjct: 268 GE 269
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 55.6 bits (128), Expect = 1e-08
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQG--------GVVSRDSGF-NRQREKCFKCNRTGHFARDCKEEA 268
VCY C + GH +RECT+ G +GF N F G F +
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGF--GGDGGFGGGEERGP 241
Query: 269 DRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 385
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 242 MKCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 191 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 322
G + CF C + GH + DC KE R CY C GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 41.9 bits (94), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 388
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 38.7 bits (86), Expect = 0.002
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE-ADRCYRCNGT 295
C+ C + GH + +C + R+ C+ C + GH +R+C EE R R G
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEERKPREGRTGGF 212
Query: 296 GHIAR----------------ECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 427
G A + C+NC GH + CPE R C+NC
Sbjct: 213 GGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR-----GCFNC 267
Query: 428 NK 433
+
Sbjct: 268 GE 269
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 55.6 bits (128), Expect = 1e-08
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQG--------GVVSRDSGF-NRQREKCFKCNRTGHFARDCKEEA 268
VCY C + GH +RECT+ G +GF N F G F +
Sbjct: 184 VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDGF--GGDGGFGGGEERGP 241
Query: 269 DRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 385
+C+ C G GH + EC + P C+NC + GH + CP
Sbjct: 242 MKCFNCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 191 GFNRQREKCFKCNRTGHFARDC----KEEADR-CYRCNGTGHIARECAQ 322
G + CF C + GH + DC KE R CY C GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 41.9 bits (94), Expect = 2e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
+C+NC + GH + +CPE +E + CYNC +
Sbjct: 159 NCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQ 190
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 388
E + C+ C GH + +C + E CYNC + GH +R C E
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 38.7 bits (86), Expect = 0.002
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE-ADRCYRCNGT 295
C+ C + GH + +C + R+ C+ C + GH +R+C EE R R G
Sbjct: 160 CFNCQQPGHRSSDCPEPRK-------EREPRVCYNCQQPGHTSRECTEERKPREGRTGGF 212
Query: 296 GHIAR----------------ECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 427
G A + C+NC GH + CPE R C+NC
Sbjct: 213 GGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR-----GCFNC 267
Query: 428 NK 433
+
Sbjct: 268 GE 269
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 209 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 373
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 629 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 687
Query: 374 RNCPE 388
NCP+
Sbjct: 688 WNCPK 692
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-CYRC 286
S C C + G C++ S+D+ +KC +C ++G C + +R C+RC
Sbjct: 628 SDRCSDCQQRGWHMFWCSKK---SKDNA----SQKCDECQQSGWHMASCFKLKNRACFRC 680
Query: 287 NGTGHIARECAQSPDEPS 340
N GHIA C + + S
Sbjct: 681 NEMGHIAWNCPKKNENTS 698
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 209 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 373
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 532 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 590
Query: 374 RNCPE 388
NCP+
Sbjct: 591 WNCPK 595
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-CYRC 286
S C C + G C++ S+D+ +KC +C ++G C + +R C+RC
Sbjct: 531 SDRCSDCQQRGWHMFWCSKK---SKDNA----SQKCDECQQSGWHMASCFKLKNRACFRC 583
Query: 287 NGTGHIARECAQSPDEPS 340
N GHIA C + + S
Sbjct: 584 NEMGHIAWNCPKKNENTS 601
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 39.5 bits (88), Expect = 0.001
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Frame = +2
Query: 209 EKCFKCNRTG-HF---ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIA 373
++C C + G H ++ K+ A +C C +G C + + +C+ CN+ GHIA
Sbjct: 543 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMASCFKLKNR-ACFRCNEMGHIA 601
Query: 374 RNCPE 388
NCP+
Sbjct: 602 WNCPK 606
Score = 38.3 bits (85), Expect = 0.002
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-CYRC 286
S C C + G C++ S+D+ +KC +C ++G C + +R C+RC
Sbjct: 542 SDRCSDCQQRGWHMFWCSKK---SKDNA----SQKCDECQQSGWHMASCFKLKNRACFRC 594
Query: 287 NGTGHIARECAQSPDEPS 340
N GHIA C + + S
Sbjct: 595 NEMGHIAWNCPKKNENTS 612
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 319
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
Score = 33.9 bits (74), Expect = 0.051
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 266 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC---PEGGRESATQTCY 421
++ C+ C GH A EC S + C NC H A C + G + T+ Y
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANECASWSKNGVQEPTKVTY 253
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 256
S+ C+ C + GH A EC+ QRE C C H A +C
Sbjct: 201 SNTCFNCKKYGHRATECSA-----------PQRE-CANCGDPNHRANEC 237
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECA 319
CF C + GH A +C C C H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPNHRANECA 238
Score = 33.9 bits (74), Expect = 0.051
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 266 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC---PEGGRESATQTCY 421
++ C+ C GH A EC S + C NC H A C + G + T+ Y
Sbjct: 201 SNTCFNCKKYGHRATEC--SAPQRECANCGDPNHRANECASWSKNGVQEPTKVTY 253
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 256
S+ C+ C + GH A EC+ QRE C C H A +C
Sbjct: 201 SNTCFNCKKYGHRATECSA-----------PQRE-CANCGDPNHRANEC 237
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.013
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 236 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 391
G F + RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 259
C C H + EC V+ KC C GH ++DCK
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQI-------KCTNCGAFGHISKDCK 469
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 35.9 bits (79), Expect = 0.013
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Frame = +2
Query: 236 GHFARDCKEEADRCYRCNGTGHIARECAQSP---DEPSCYNCNKTGHIARNC--PEG 391
G F + RC C H + EC +P ++ C NC GHI+++C P+G
Sbjct: 417 GTFRPEDLANGARCSNCGSDEHKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 259
C C H + EC V+ KC C GH ++DCK
Sbjct: 430 CSNCGSDEHKSWECPDAPNVTNQI-------KCTNCGAFGHISKDCK 469
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 35.5 bits (78), Expect = 0.017
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 272 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 400
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 156
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 212 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 322
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 112 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 152
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.017
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 272 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 400
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 212 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 322
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.017
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 272 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 400
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 212 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 322
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 35.5 bits (78), Expect = 0.017
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +2
Query: 272 RCYRCNGTG-HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGRE 400
RC+RC H A+ C D CY C H++ CPE R+
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRRK 187
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +2
Query: 212 KCFKCNRTG-HFARDC---KEEADRCYRCNGTGHIARECAQ 322
+CF+C + H A+ C K +A CY C H++ C +
Sbjct: 143 RCFRCGKFATHKAKSCPNVKTDAKVCYTCGSEEHVSSICPE 183
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 35.5 bits (78), Expect = 0.017
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCPEG 391
+CY C + GHI+RNCP G
Sbjct: 5 NCYKCQQPGHISRNCPNG 22
Score = 31.9 bits (69), Expect = 0.21
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 104 MSSSVCYKCNRTGHFARECTQG 169
MS CYKC + GH +R C G
Sbjct: 1 MSDRNCYKCQQPGHISRNCPNG 22
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKE-EADRCYRCNGTGHI 304
C+KC + GH +R+C E+D R G G +
Sbjct: 6 CYKCQQPGHISRNCPNGESDGGRRGGGGGGV 36
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +2
Query: 266 ADR-CYRCNGTGHIAREC 316
+DR CY+C GHI+R C
Sbjct: 2 SDRNCYKCQQPGHISRNC 19
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 35.1 bits (77), Expect = 0.022
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPS-----CYNCNKTGHIARN 379
C C+ GH A C + R N H + + PD+ + CY C + GH A
Sbjct: 206 CHNCHERGHKATTCPHLPGQT-RQNQDHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYANR 264
Query: 380 CPEGGRESATQTCY 421
C +G + T +
Sbjct: 265 CHKGALAFLSNTAH 278
Score = 31.9 bits (69), Expect = 0.21
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 14/93 (15%)
Frame = +2
Query: 77 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQR-------EK------- 214
A +KP + C+ C+ GH A C +R + + R +K
Sbjct: 192 AVSHAKPTYSQAITCHNCHERGHKATTCPHLPGQTRQNQDHHHRVDLSLIPDKKNLSDVT 251
Query: 215 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 313
C+KC GH+A C + A + N T H+A E
Sbjct: 252 CYKCGEKGHYANRCHKGA-LAFLSN-TAHLAHE 282
Score = 27.5 bits (58), Expect = 4.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCP 385
+C+NC++ GH A CP
Sbjct: 205 TCHNCHERGHKATTCP 220
>Z83127-1|CAB05630.1| 160|Caenorhabditis elegans Hypothetical
protein T23F6.1 protein.
Length = 160
Score = 34.3 bits (75), Expect = 0.039
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Frame = -1
Query: 428 CSYSRSASQTPAPPRDSSVRCG-PSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLPCN 252
C QT P CG P C C V T C C+ +C+N C
Sbjct: 68 CGSMGMCGQTCCPSAPPPCSCGTPGCMQCVQQTVLVPVTTTTCCKCCQPVCTNA----CT 123
Query: 251 PSQSVLCGCT 222
CGCT
Sbjct: 124 NGGGCSCGCT 133
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 33.9 bits (74), Expect = 0.051
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +2
Query: 275 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN 430
CY+C GH++++C QS N KT H N E G T N
Sbjct: 313 CYKCKVVGHVSKDCPQSSTNSGVTN-RKTEHSEVNTLEVGSGRQTSPSLRLN 363
Score = 32.3 bits (70), Expect = 0.16
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 335 PSCYNCNKTGHIARNCPEGGRES 403
P CY C GH++++CP+ S
Sbjct: 311 PYCYKCKVVGHVSKDCPQSSTNS 333
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGF-NRQRE 211
CYKC GH +++C Q S +SG NR+ E
Sbjct: 313 CYKCKVVGHVSKDCPQS---STNSGVTNRKTE 341
Score = 26.6 bits (56), Expect = 7.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEA 268
C+KC GH ++DC + +
Sbjct: 313 CYKCKVVGHVSKDCPQSS 330
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 31.9 bits (69), Expect = 0.21
Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Frame = +2
Query: 113 SVCYKCNRTGHFAR--ECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 286
S C C+ T H R EC R+ CF C R+GH C C C
Sbjct: 312 SPCIFCSSTSHVHRHEECPIFNTAEARIQKAREIGLCFGCLRSGHQRSKCSRPR-TCNHC 370
Query: 287 NGTGH 301
G H
Sbjct: 371 KGNHH 375
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 31.5 bits (68), Expect = 0.27
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 302 IARECAQ--SPDEPSCYNCNKTGHIARNCPE 388
+ R+C Q +P + C+ C++ GH +CP+
Sbjct: 1342 LLRKCNQGSAPTDRQCHQCHRIGHFVESCPQ 1372
Score = 31.1 bits (67), Expect = 0.36
Identities = 25/81 (30%), Positives = 34/81 (41%)
Frame = +2
Query: 152 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPD 331
R+C QG + +RQ C +C+R GHF C + A AR+ S
Sbjct: 1344 RKCNQGSAPT-----DRQ---CHQCHRIGHFVESCPQRA--------LAKEARKRFGSNS 1387
Query: 332 EPSCYNCNKTGHIARNCPEGG 394
S Y N +G +N EGG
Sbjct: 1388 TNSSYRSNDSGRGFKNGEEGG 1408
Score = 31.1 bits (67), Expect = 0.36
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVV--SRDSGFNRQREKCFKCNRTGHFARDCKEEADR 274
C++C+R GHF C Q + +R + ++ N +G ++ +E DR
Sbjct: 1357 CHQCHRIGHFVESCPQRALAKEARKRFGSNSTNSSYRSNDSGRGFKNGEEGGDR 1410
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 31.1 bits (67), Expect = 0.36
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Frame = -1
Query: 428 CSYSRSASQTPAPPRDSSVRCGPSCC-SCNMTA---RPGSVRTRALC-AQCRYICSNGQP 264
C S S P + V+C PSC +C + P +V+ C QC+ C QP
Sbjct: 109 CQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQCQQQCQQQCVQTQP 168
Query: 263 L-PCNPSQSVLC 231
+ C P C
Sbjct: 169 IQQCQPQCQQQC 180
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 30.3 bits (65), Expect = 0.63
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Frame = -1
Query: 428 CSYSRSASQTPAPPRDSSVRCGPSCC-SCNMTA---RPGSVRTRALC-AQCRYICSNGQP 264
C S S P + V+C PSC +C + P V+ C QC+ C QP
Sbjct: 109 CQQSCQTSSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAPVQCVPQCQQQCQQQCVQTQP 168
Query: 263 L-PCNPSQSVLC 231
+ C P C
Sbjct: 169 IQQCQPQCQQQC 180
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 30.3 bits (65), Expect = 0.63
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Frame = +2
Query: 152 RECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPD 331
R C Q + + GF K C+ G DC +++ +C C G R+C Q
Sbjct: 825 RRCDQCAIGTY--GFGPSGCKKCDCDAVGSLGNDCDKQSGQCV-CREKGIYGRQCNQCQP 881
Query: 332 E----PSCYNCNKTGH 367
P C C H
Sbjct: 882 GFWGFPECRTCQCNDH 897
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 29.9 bits (64), Expect = 0.83
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = -1
Query: 428 CSYSRSASQTPAPPRDSSVRCGPSCCS-CNMTARPGSVRTRALCAQCRYICSNGQPLPCN 252
C R+ Q+ R P+C S C+ G T CR C G PCN
Sbjct: 466 CPCGRNTLQSLGVTRKKCTDMVPTCDSVCDKWLTCG---TPGKNHHCREKCHEGPCPPCN 522
Query: 251 PSQSVLCGC 225
+ SV+C C
Sbjct: 523 LNTSVICRC 531
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 29.9 bits (64), Expect = 0.83
Identities = 10/36 (27%), Positives = 14/36 (38%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKC 226
C+ C GH AR C + + G+ Q C
Sbjct: 576 CHYCKNVGHMARNCKKKAFAEKRKGYEDQARSITSC 611
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 200 RQREKCFKCNRTGHFARDCKEEA 268
R + +C C GH AR+CK++A
Sbjct: 571 RFKGQCHYCKNVGHMARNCKKKA 593
Score = 27.1 bits (57), Expect = 5.9
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 341 CYNCNKTGHIARNC 382
C+ C GH+ARNC
Sbjct: 576 CHYCKNVGHMARNC 589
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 29.9 bits (64), Expect = 0.83
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 274
+ +C +C + G C+ + + R +CF C GH + C + DR
Sbjct: 578 NGICAECKQVGGHEPSCS---LAPKTWKRERPPPQCFTCGEMGHISTYCPKRIDR 629
Score = 29.9 bits (64), Expect = 0.83
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Frame = +2
Query: 275 CYRCNGTGHIARECAQSPDE-------PSCYNCNKTGHIARNCPE 388
C C G C+ +P P C+ C + GHI+ CP+
Sbjct: 581 CAECKQVGGHEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYCPK 625
>AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical
protein Y51H4A.26 protein.
Length = 107
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 245 ARDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGH----IARNCPE 388
A+ C+ D + Y+ GH R+C D P Y C K G I +NCP+
Sbjct: 37 AKKCENYFDCQQYQTCIFGHCVRKCTSERDCPLGYICFKNGDGQRCIKKNCPK 89
>U20861-8|AAA62297.3| 372|Caenorhabditis elegans Hypothetical
protein C28H8.9a protein.
Length = 372
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGH 367
E + C C+GT + + D SC++C ++GH
Sbjct: 252 EISTSCDFCSGTAFMNKNTKLPEDLVSCHDCGRSGH 287
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = -1
Query: 371 RCGPSCCSCNMTARPGSVRTRALCA-QCRYICSNGQPLPCNPSQSVLCGC 225
+C C T S + C+ C C+ + C P Q+ CGC
Sbjct: 263 QCQQQCQQQCQTRTTASQQCAPACSTSCNQSCNQPAQMACQPMQNSQCGC 312
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 28.7 bits (61), Expect = 1.9
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +2
Query: 137 TGHFARECT---QGGVVSRDSGFNRQREKCFKCNRTGHFARD--CKEEADRCYRCNGTGH 301
T +FA+ C +G ++ + ++C +C +G F E C +CNG +
Sbjct: 1887 TNNFAKSCDVSEEGQLLQCNCKPGYTGDRCDRC-ASGFFGHPQISGESCSPC-QCNGNNN 1944
Query: 302 IARECAQSPDEPSCYNC--NKTGHIARNCPEG--GRESATQTCYNC 427
+ + P+ CY C N G +C G + C +C
Sbjct: 1945 LTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 28.7 bits (61), Expect = 1.9
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +2
Query: 137 TGHFARECT---QGGVVSRDSGFNRQREKCFKCNRTGHFARD--CKEEADRCYRCNGTGH 301
T +FA+ C +G ++ + ++C +C +G F E C +CNG +
Sbjct: 1887 TNNFAKSCDVSEEGQLLQCNCKPGYTGDRCDRC-ASGFFGHPQISGESCSPC-QCNGNNN 1944
Query: 302 IARECAQSPDEPSCYNC--NKTGHIARNCPEG--GRESATQTCYNC 427
+ + P+ CY C N G +C G + C +C
Sbjct: 1945 LTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN-GT 295
CY C + GH A EC + D N +R+ + + R + D Y + T
Sbjct: 411 CYYCGKRGHTANECRR---KKSDESQNGERQDPSQSEQIAALRRQLAMQNDDPYSSDEST 467
Query: 296 GHIARECAQSPDEPS 340
++ C + ++P+
Sbjct: 468 EALSLSCQKPKEDPT 482
>AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical
protein Y59E9AL.5 protein.
Length = 99
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Frame = -1
Query: 362 PSCCSCNMTARPGSVRTRAL----CAQCRYICSNGQPLPCNPSQSVLCGCT 222
P+CC+C M + S T+ C C S + C+P S C CT
Sbjct: 49 PTCCACWMRRKKESTTTKVCVQDDCTTCS-CTSASRCSRCSPCCSGCCSCT 98
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 28.7 bits (61), Expect = 1.9
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +2
Query: 137 TGHFARECT---QGGVVSRDSGFNRQREKCFKCNRTGHFARD--CKEEADRCYRCNGTGH 301
T +FA+ C +G ++ + ++C +C +G F E C +CNG +
Sbjct: 1887 TNNFAKSCDVSEEGQLLQCNCKPGYTGDRCDRC-ASGFFGHPQISGESCSPC-QCNGNNN 1944
Query: 302 IARECAQSPDEPSCYNC--NKTGHIARNCPEG--GRESATQTCYNC 427
+ + P+ CY C N G +C G + C +C
Sbjct: 1945 LTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 28.7 bits (61), Expect = 1.9
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +2
Query: 137 TGHFARECT---QGGVVSRDSGFNRQREKCFKCNRTGHFARD--CKEEADRCYRCNGTGH 301
T +FA+ C +G ++ + ++C +C +G F E C +CNG +
Sbjct: 1887 TNNFAKSCDVSEEGQLLQCNCKPGYTGDRCDRC-ASGFFGHPQISGESCSPC-QCNGNNN 1944
Query: 302 IARECAQSPDEPSCYNC--NKTGHIARNCPEG--GRESATQTCYNC 427
+ + P+ CY C N G +C G + C +C
Sbjct: 1945 LTDSRSCHPNSGDCYLCEQNTDGRHCESCAAWFYGDAVTAKNCSSC 1990
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 28.3 bits (60), Expect = 2.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 341 CYNCNKTGHIARNCPE 388
C++C + GHI+R CP+
Sbjct: 170 CFHCQEHGHISRMCPK 185
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 311 RALCAQCRYICSNGQPLPCNPSQSVLCGC 225
R++C +C C N P P NP ++ C
Sbjct: 42 RSVCQECPSCCGNDGPQPFNPVFNIHFNC 70
>Z83104-1|CAB54204.1| 573|Caenorhabditis elegans Hypothetical
protein F09B12.1a protein.
Length = 573
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -1
Query: 431 CCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQ 294
C S+ + Q AP + + C P CC C+ A+PG A A+
Sbjct: 17 CFPTSQRSYQYGAPTQQFAA-CTPQCCGCSQ-AQPGPQPAAAAAAR 60
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Frame = +2
Query: 209 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 388
E C NR+G + D + D C + + D C C K+ H+ +C
Sbjct: 60 ENCMDVNRSGTMSLDMARQCDMSSSCGSCQRMI-----TADSRQCTTCRKSYHL--SCDS 112
Query: 389 GGRESATQ-TCYNCNK 433
S C +C +
Sbjct: 113 SDVSSLNNFVCISCRR 128
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
protein T12D8.1 protein.
Length = 2561
Score = 27.5 bits (58), Expect = 4.4
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 1/76 (1%)
Frame = +2
Query: 209 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 388
E C NR+G + D + D C + + D C C K+ H+ +C
Sbjct: 60 ENCMDVNRSGTMSLDMARQCDMSSSCGSCQRMI-----TADSRQCTTCRKSYHL--SCDS 112
Query: 389 GGRESATQ-TCYNCNK 433
S C +C +
Sbjct: 113 SDVSSLNNFVCISCRR 128
>Z81491-10|CAB04023.3| 282|Caenorhabditis elegans Hypothetical
protein D1086.6 protein.
Length = 282
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/50 (26%), Positives = 17/50 (34%)
Frame = +2
Query: 284 CNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
C I A +P E C NK + R C G + C+K
Sbjct: 77 CQSACGIPHVLASNPTEEVCEKWNKCDDVKRQCAAAGGNYYAGANFQCSK 126
>U80955-3|AAM97944.1| 95|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform a protein.
Length = 95
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDCKEEADR----CYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 370
+ KC KC ++ + A + + C++CN + C +P E Y C K H
Sbjct: 7 EHPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELY-C-KQCHG 64
Query: 371 ARNCPEG 391
+ P+G
Sbjct: 65 RKFGPKG 71
>U80955-1|AAM97945.1| 113|Caenorhabditis elegans Mlp/crp family
(muscle lim protein/cysteine-rich protein) protein 1,
isoform b protein.
Length = 113
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDCKEEADR----CYRCNGTGHIARECAQSPDEPSCYNCNKTGHI 370
+ KC KC ++ + A + + C++CN + C +P E Y C K H
Sbjct: 7 EHPKCPKCGKSVYAAEEMSAGGYKWHKFCFKCNMCNKLLDSCTVAPHEAELY-C-KQCHG 64
Query: 371 ARNCPEG 391
+ P+G
Sbjct: 65 RKFGPKG 71
>AL021448-1|CAA16276.2| 898|Caenorhabditis elegans Hypothetical
protein Y2H9A.1 protein.
Length = 898
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = -1
Query: 416 RSASQTPAPPRDSSVRCG-PSCC--SCNMTARPGSVRTRALCAQ----CRYICS-NGQPL 261
R + T P D +++ +CC C ++ ++ + C CR + + NG+P+
Sbjct: 285 RKNAVTVVPKADVTMKSHIKACCVIGCEKSSNSKTIMCKTCCRSFHSGCREVETLNGKPI 344
Query: 260 PCNPSQSVLCG 228
P + +S +CG
Sbjct: 345 PDDQCESCVCG 355
>AF233290-1|AAF62516.1| 898|Caenorhabditis elegans maternal-effect
sterile 4 protein.
Length = 898
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Frame = -1
Query: 416 RSASQTPAPPRDSSVRCG-PSCC--SCNMTARPGSVRTRALCAQ----CRYICS-NGQPL 261
R + T P D +++ +CC C ++ ++ + C CR + + NG+P+
Sbjct: 285 RKNAVTVVPKADVTMKSHIKACCVIGCEKSSNSKTIMCKTCCRSFHSGCREVETLNGKPI 344
Query: 260 PCNPSQSVLCG 228
P + +S +CG
Sbjct: 345 PDDQCESCVCG 355
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Frame = -1
Query: 434 TCCSYSRSASQTPAPPRDSSVRCGPS-CCSCNMTARP--GSVRTRALCAQCRYICSNGQP 264
TCC A+ P PP P+ CC R S C R C P
Sbjct: 131 TCCPPPTPAAPPPPPPPPPPAPEAPTQCCGSQPYGRTPCRSGCPNGDCGCGRPCCYYQNP 190
Query: 263 LPCNPSQSVLC 231
CN Q C
Sbjct: 191 TCCNQGQKACC 201
>AC024859-26|AAK29977.2| 300|Caenorhabditis elegans Hypothetical
protein Y71H2AM.2 protein.
Length = 300
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -1
Query: 431 CCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYI 282
C S + PAPP VRC C+C + + S R CR +
Sbjct: 81 CHSCDEATPIRPAPPGKKYVRCP---CNCLLICKASSTRIACPRNNCRRV 127
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
protein W01F3.3 protein.
Length = 2175
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 314 CAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 415
CA++ D PS Y C+ H + CPE + QT
Sbjct: 499 CAKT-DCPSGYRCSVVQHSSVCCPENNKVVGLQT 531
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -1
Query: 428 CSYSRSASQTPAP-PRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNG-QPLPC 255
CS S +++Q P C SC + +A P + + +QC+ CSN C
Sbjct: 233 CSSSCTSNQAPIVIVAQQGDSCSNSCSNQCQSACPTPICVQQCNSQCQSQCSNSCSGNSC 292
Query: 254 NPSQSVL 234
N Q ++
Sbjct: 293 NQQQVIV 299
>Z29116-5|CAA82373.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +2
Query: 122 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGH 301
Y C G+ A + Q + + GF QR + + G D + C R NGT +
Sbjct: 278 YVCQNDGYCAHDSNQMPICYCEQGFTGQRCEIECPSGFGGIHCDLPLQRPHCSRSNGTCY 337
Query: 302 IAREC 316
C
Sbjct: 338 NDGRC 342
>Z19555-7|CAA79620.1| 1295|Caenorhabditis elegans Hypothetical
protein F02A9.6 protein.
Length = 1295
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +2
Query: 122 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGH 301
Y C G+ A + Q + + GF QR + + G D + C R NGT +
Sbjct: 278 YVCQNDGYCAHDSNQMPICYCEQGFTGQRCEIECPSGFGGIHCDLPLQRPHCSRSNGTCY 337
Query: 302 IAREC 316
C
Sbjct: 338 NDGRC 342
>U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile
(unfertilizable) protein1 protein.
Length = 551
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +2
Query: 254 CKEEADRCYR-CNGTGHIA---RECAQSPDEPSCYNCNK-TGHIARNCPEGGRESATQTC 418
C+ A +C + C H+ +CA DE C +C + +G C +G TQ C
Sbjct: 254 CQNNAHKCGKQCIKASHVCDGVAQCADGSDEQQC-DCQRCSGTDKALCDDGTCIMRTQVC 312
>U28741-4|AAA68328.1| 747|Caenorhabditis elegans Hypothetical
protein F35D2.4 protein.
Length = 747
Score = 26.6 bits (56), Expect = 7.8
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Frame = +2
Query: 194 FNRQREKCFKCNRTGHFARD-----CKEEADRCYRCNGTGHIARECAQ----SPDEPSCY 346
FNR +C C T + D C + +R NG EC + SPD+ C
Sbjct: 11 FNRIELRCEICPNTTIPSDDMMSCKCSKNQIEIFR-NGFVPTCEECPEGTLSSPDQTGCL 69
Query: 347 NCN 355
NCN
Sbjct: 70 NCN 72
>M25580-1|AAA28058.1| 1295|Caenorhabditis elegans protein (
C.elegans glp-1 gene,complete cds. ).
Length = 1295
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/65 (26%), Positives = 25/65 (38%)
Frame = +2
Query: 122 YKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGH 301
Y C G+ A + Q + + GF QR + + G D + C R NGT +
Sbjct: 278 YVCQNDGYCAHDSNQMPICYCEQGFTGQRCEIECPSGFGGIHCDLPLQRPHCSRSNGTCY 337
Query: 302 IAREC 316
C
Sbjct: 338 NDGRC 342
>AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2b protein.
Length = 700
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +2
Query: 251 DCKEEADRCYRCNGTGH-IARECAQSPDEPSCYNCNKTGHIARNCP 385
D +E C CN H + + PD + C K H+ CP
Sbjct: 249 DVADEMVFCDMCNTCVHMVCAGIEELPDPAEPWKCAKCAHMGTPCP 294
>AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2a protein.
Length = 741
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = +2
Query: 251 DCKEEADRCYRCNGTGH-IARECAQSPDEPSCYNCNKTGHIARNCP 385
D +E C CN H + + PD + C K H+ CP
Sbjct: 290 DVADEMVFCDMCNTCVHMVCAGIEELPDPAEPWKCAKCAHMGTPCP 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,919,373
Number of Sequences: 27780
Number of extensions: 206357
Number of successful extensions: 1159
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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