Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0927
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.21 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    22   2.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    22   2.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 335 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
           P C  C    H  + CP+G +   T    N  K
Sbjct: 76  PICGACGDIAHTVKYCPKGTKNPGTLATVNAFK 108


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 412 LRRRLPPPLGTVPCD 368
           LRR+L   LG  PCD
Sbjct: 48  LRRQLKCALGEAPCD 62


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +2

Query: 83  EFSKPIAMSSSVCYKCNRTGHFAR 154
           +  KP+    +V Y   ++G+F+R
Sbjct: 165 DIGKPVVAEETVDYMLEKSGNFSR 188


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 412 LRRRLPPPLGTVPCD 368
           LRR+L   LG  PCD
Sbjct: 48  LRRQLKCALGEAPCD 62


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -2

Query: 199 IETGIPRHHAPLRAFAREMPGP 134
           +  G+P HH       ++MP P
Sbjct: 57  LRQGVPGHHYGAAGSQQDMPYP 78


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 111 QAFATSATGPGI 146
           Q FAT+A+ PG+
Sbjct: 909 QGFATAASSPGL 920


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,096
Number of Sequences: 438
Number of extensions: 2080
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)