Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0927
(434 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 91 2e-19
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 80 7e-16
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 75 3e-14
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 65 2e-11
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 62 2e-10
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 58 3e-09
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 51 4e-07
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 51 4e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 51 4e-07
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 51 4e-07
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 51 4e-07
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 49 2e-06
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 48 2e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 48 2e-06
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 44 4e-05
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 40 0.001
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 39 0.002
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 39 0.002
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 38 0.002
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.002
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.002
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.003
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 37 0.005
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.016
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.021
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 35 0.027
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 33 0.083
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.11
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 32 0.19
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.25
At3g31950.1 68416.m04046 hypothetical protein 31 0.34
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.44
At5g48250.1 68418.m05961 zinc finger (B-box type) family protein... 31 0.44
At5g47430.1 68418.m05844 expressed protein 30 0.59
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 30 0.59
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 0.59
At4g17410.1 68417.m02607 expressed protein 30 0.59
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 30 0.59
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 0.59
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 0.59
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 0.77
At2g16690.1 68415.m01915 hypothetical protein similar to zinc fi... 29 1.0
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 1.0
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 1.4
At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 29 1.4
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 29 1.4
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 1.4
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 29 1.8
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 1.8
At4g06479.1 68417.m00885 hypothetical protein 29 1.8
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 28 2.4
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 2.4
At5g47390.1 68418.m05840 myb family transcription factor contain... 28 3.1
At4g06526.1 68417.m00938 hypothetical protein 28 3.1
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 28 3.1
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 4.1
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 27 4.1
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 27 4.1
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 27 5.5
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 27 5.5
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 27 5.5
At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein... 27 5.5
At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein... 27 5.5
At4g10630.1 68417.m01737 glutaredoxin family protein contains Pf... 27 5.5
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 5.5
At1g28210.2 68414.m03463 DNAJ heat shock protein, putative stron... 27 5.5
At1g28210.1 68414.m03462 DNAJ heat shock protein, putative stron... 27 5.5
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 27 7.2
At3g20150.1 68416.m02554 kinesin motor family protein contains P... 27 7.2
At2g30470.1 68415.m03711 transcriptional factor B3 family protei... 27 7.2
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 27 7.2
At5g40320.1 68418.m04892 DC1 domain-containing protein contains ... 26 9.5
At4g18970.1 68417.m02794 GDSL-motif lipase/hydrolase family prot... 26 9.5
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)... 26 9.5
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 26 9.5
At3g17460.1 68416.m02229 PHD finger family protein contains Pfam... 26 9.5
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 26 9.5
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 26 9.5
At2g19650.1 68415.m02296 DC1 domain-containing protein contains ... 26 9.5
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 91.5 bits (217), Expect = 2e-19
Identities = 47/123 (38%), Positives = 61/123 (49%), Gaps = 18/123 (14%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDS--GFNRQREKCFKCNRTGHFARDCKEE--------- 265
CY C GH AR+CTQ V + D + C+ C GHFARDC ++
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSG 225
Query: 266 ---ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIARNCPEGGRESA--TQTCYN 424
+ CY C G GHIAR+CA + +PS CY C +GH+AR+C + G CY
Sbjct: 226 GGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYK 284
Query: 425 CNK 433
C K
Sbjct: 285 CGK 287
Score = 88.6 bits (210), Expect = 2e-18
Identities = 40/96 (41%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC--KEEADR-CYRCN 289
CY C GHFAR+CTQ C+ C GH ARDC K + R CY+C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 290 GTGHIARECAQ-----SPDEPSCYNCNKTGHIARNC 382
G+GH+AR+C Q ++ +CY C K GH AR C
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 81.4 bits (192), Expect = 2e-16
Identities = 42/127 (33%), Positives = 56/127 (44%), Gaps = 24/127 (18%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA---------- 268
CY C TGHFAR+CT G + + C+ C GH ARDC +++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 269 ----DRCYRCNGTGHIARECAQ----------SPDEPSCYNCNKTGHIARNCPEGGRESA 406
D CY C GH AR+C Q +CY+C GHIAR+C +
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC--ATKRQP 251
Query: 407 TQTCYNC 427
++ CY C
Sbjct: 252 SRGCYQC 258
Score = 77.0 bits (181), Expect = 5e-15
Identities = 46/136 (33%), Positives = 57/136 (41%), Gaps = 31/136 (22%)
Frame = +2
Query: 113 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC------------ 256
S CY C GH +++C GG +R E C+ C TGHFARDC
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGAT 159
Query: 257 KEEADRCYRCNGTGHIARECAQSP------------DEPSCYNCNKTGHIARNCPE---- 388
K D CY C GH+AR+C Q CY C GH AR+C +
Sbjct: 160 KGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAA 219
Query: 389 GGRES---ATQTCYNC 427
G S + TCY+C
Sbjct: 220 GNVRSGGGGSGTCYSC 235
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/50 (44%), Positives = 28/50 (56%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 268
CY+C +GH AR+C Q G SG C+KC + GHFAR+C A
Sbjct: 255 CYQCGGSGHLARDCDQRG-----SGGGGNDNACYKCGKEGHFARECSSVA 299
Score = 35.1 bits (77), Expect = 0.021
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 107 SSSVCYKCNRTGHFARECT 163
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 79.8 bits (188), Expect = 7e-16
Identities = 42/127 (33%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQR---EKCFKCNRTGHFARDCKEEA------- 268
CY C GH A++C G +R G + + C+ C GHFARDC++
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNGGGNVGGG 222
Query: 269 -DRCYRCNGTGHIARECAQSPDEP------SCYNCNKTGHIARNCPEGGRESA-----TQ 412
CY C G GHIA+ C +CY C TGH+AR+C G S+ +
Sbjct: 223 GSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSN 282
Query: 413 TCYNCNK 433
C+ C K
Sbjct: 283 KCFICGK 289
Score = 79.4 bits (187), Expect = 1e-15
Identities = 45/128 (35%), Positives = 55/128 (42%), Gaps = 25/128 (19%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK------------- 259
CY C GHFAR+C Q G + G R C+ C GH A+DC+
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHLAKDCRGGSGGNRYGGGGG 190
Query: 260 --EEADRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRES 403
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG
Sbjct: 191 RGSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GG 249
Query: 404 ATQTCYNC 427
+ CY C
Sbjct: 250 GGRACYEC 257
Score = 69.7 bits (163), Expect = 8e-13
Identities = 37/104 (35%), Positives = 47/104 (45%), Gaps = 16/104 (15%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR-------- 274
CY C GHFAR+C Q G + G + C+ C GH A+ C +
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGGGST----CYTCGGVGHIAKVCTSKIPSGGGGGGRA 253
Query: 275 CYRCNGTGHIARECAQSPDEPS--------CYNCNKTGHIARNC 382
CY C GTGH+AR+C + S C+ C K GH AR C
Sbjct: 254 CYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 67.3 bits (157), Expect = 4e-12
Identities = 41/138 (29%), Positives = 56/138 (40%), Gaps = 31/138 (22%)
Frame = +2
Query: 107 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTGHFARDCKEEAD- 271
S C+ C GH A++C G G S G R+ +C+ C GHFARDC++
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGG 151
Query: 272 ----------RCYRCNGTGHIAREC-------------AQSPDEPSCYNCNKTGHIARNC 382
CY C GH+A++C + CY C GH AR+C
Sbjct: 152 NSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDC 211
Query: 383 PEGGRES---ATQTCYNC 427
+ G + TCY C
Sbjct: 212 RQNGGGNVGGGGSTCYTC 229
Score = 55.6 bits (128), Expect = 1e-08
Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +2
Query: 113 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEE--------- 265
S CY C GH A+ CT + S G R C++C TGH ARDC
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYECGGTGHLARDCDRRGSGSSGGGG 279
Query: 266 -ADRCYRCNGTGHIAREC 316
+++C+ C GH AREC
Sbjct: 280 GSNKCFICGKEGHFAREC 297
Score = 54.8 bits (126), Expect = 2e-08
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 268
CY+C TGH AR+C + G S SG KCF C + GHFAR+C A
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEGHFARECTSVA 301
Score = 50.0 bits (114), Expect = 7e-07
Identities = 38/118 (32%), Positives = 46/118 (38%), Gaps = 35/118 (29%)
Frame = +2
Query: 179 SRDSGFNRQREKCFKCNRTGHFARDCKEEA----------------DRCYRCNGTGHIAR 310
SR SG N CF C GH A+DC + CY C GH AR
Sbjct: 89 SRGSGGN-----CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFAR 143
Query: 311 ECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGRESATQTCYNC 427
+C QS S CY+C + GH+A++C GGR S CY C
Sbjct: 144 DCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMC 201
Score = 32.3 bits (70), Expect = 0.15
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECT 163
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 74.5 bits (175), Expect = 3e-14
Identities = 37/95 (38%), Positives = 55/95 (57%)
Frame = +2
Query: 107 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC 286
+ +C+ C ++GH AR+C+ SR +G R CFK GH A DC + C C
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK---QGHLAADCTNDK-ACKNC 162
Query: 287 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG 391
+GHIAR+C ++P C C+ +GH+AR+CP+G
Sbjct: 163 RTSGHIARDCR---NDPVCNICSISGHVARHCPKG 194
Score = 72.9 bits (171), Expect = 8e-14
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Frame = +2
Query: 113 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNG 292
++C C R GHFAR+C+ V C C GH A +C E+ RC+ C
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV-------------CNNCGLPGHIAAECTAES-RCWNCRE 100
Query: 293 TGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-GRESATQTCYNCNK 433
GH+A C+ +E C++C K+GH AR+C R + C NC K
Sbjct: 101 PGHVASNCS---NEGICHSCGKSGHRARDCSNSDSRAGDLRLCNNCFK 145
Score = 64.9 bits (151), Expect = 2e-11
Identities = 32/77 (41%), Positives = 37/77 (48%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 382
Q C C R GHFARDC C C GHIA EC E C+NC + GH+A NC
Sbjct: 53 QGNLCNNCKRPGHFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNC 108
Query: 383 PEGGRESATQTCYNCNK 433
G C++C K
Sbjct: 109 SNEG------ICHSCGK 119
Score = 64.9 bits (151), Expect = 2e-11
Identities = 38/102 (37%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Frame = +2
Query: 113 SVCYKCNRTGHFARECTQGGVV--SRDSGF---NRQREK-CFKCNRTGHFARDCKEEADR 274
SVC C GH A ECT R+ G N E C C ++GH ARDC R
Sbjct: 74 SVCNNCGLPGHIAAECTAESRCWNCREPGHVASNCSNEGICHSCGKSGHRARDCSNSDSR 133
Query: 275 ------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 382
C C GH+A +C ++ +C NC +GHIAR+C
Sbjct: 134 AGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDC 172
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR--CYRCN 289
VC C+ +GH AR C +G D G +R R+ + +RD + + C+ C
Sbjct: 177 VCNICSISGHVARHCPKGDSNYSDRG-SRVRDGGMQRGGLSRMSRDREGVSAMIICHNCG 235
Query: 290 GTGHIAREC 316
G GH A EC
Sbjct: 236 GRGHRAYEC 244
Score = 37.1 bits (82), Expect = 0.005
Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQGGVVS--RDSGFN----RQREKCFKCNRTGHFARDCKEE---- 265
+C C + GH A +CT R SG R C C+ +GH AR C +
Sbjct: 139 LCNNCFKQGHLAADCTNDKACKNCRTSGHIARDCRNDPVCNICSISGHVARHCPKGDSNY 198
Query: 266 ADRCYRCN-------GTGHIARECAQSPDEPSCYNCNKTGHIARNCP 385
+DR R G ++R+ C+NC GH A CP
Sbjct: 199 SDRGSRVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYECP 245
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQGGVVSRDSGFNR 202
+C+ C GH A EC V D GF R
Sbjct: 230 ICHNCGGRGHRAYECPSARVA--DRGFRR 256
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 64.9 bits (151), Expect = 2e-11
Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 14/125 (11%)
Frame = +2
Query: 101 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTGHFARDCKEEAD 271
A + + CYKC + GH+AR+CT V D+G + CFKC + GH++RDC ++
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQS- 287
Query: 272 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP--------EGGR---ESATQTC 418
+ + S CY C K GH +R+C + G+ S+T C
Sbjct: 288 -----GNPKYEPGQMKSSSSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDC 342
Query: 419 YNCNK 433
Y C K
Sbjct: 343 YKCGK 347
Score = 51.2 bits (117), Expect = 3e-07
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +2
Query: 107 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNRTGHFARDCKEEA 268
SS CYKC + GH++R+CT Q SG + C+KC + GH++RDC A
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPA 359
Score = 36.7 bits (81), Expect = 0.007
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 74 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 211
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 61.7 bits (143), Expect = 2e-10
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 19/88 (21%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSG-------FN-RQREKCFKCNRTGHFARDC------ 256
CY+C + GH C + S ++ FN R+ +C++C GHFAR+C
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 257 -----KEEADRCYRCNGTGHIARECAQS 325
+E CYRCNG+GH AREC S
Sbjct: 347 STSHGRESQTLCYRCNGSGHFARECPNS 374
Score = 58.8 bits (136), Expect = 1e-09
Identities = 26/77 (33%), Positives = 38/77 (49%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCN 289
+S CY+C GHFAREC +S G + C++CN +GHFAR+C + R
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSGHFARECPNSSQVSKRDR 382
Query: 290 GTGHIARECAQSPDEPS 340
T + + + E S
Sbjct: 383 ETSTTSHKSRKKNKENS 399
Score = 54.0 bits (124), Expect = 4e-08
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 385
C+ C GH + +C R C+ C H A++C++ D CY C KTGH A++CP
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCP 224
Query: 386 EGGRE-SATQTCYNC 427
+ + S C C
Sbjct: 225 DKYKNGSKGAVCLRC 239
Score = 50.8 bits (116), Expect = 4e-07
Identities = 38/123 (30%), Positives = 48/123 (39%), Gaps = 6/123 (4%)
Frame = +2
Query: 77 AQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDC 256
A+ F P A S CY C GH + C ++R+ CF C H A+ C
Sbjct: 155 ARYFDPPDAGWVS-CYSCGEQGHTSFNCPTP---------TKRRKPCFICGSLEHGAKQC 204
Query: 257 KEEADRCYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCP-EGGRESATQT-C 418
+ D CY C TGH A++C S C C GH C E +E C
Sbjct: 205 SKGHD-CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGHDMILCKYEYSKEDLKDVQC 263
Query: 419 YNC 427
Y C
Sbjct: 264 YIC 266
Score = 48.0 bits (109), Expect = 3e-06
Identities = 35/128 (27%), Positives = 46/128 (35%), Gaps = 7/128 (5%)
Frame = +2
Query: 68 VLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA 247
+L E+SK + CY C GH C + G C++C + GH
Sbjct: 247 ILCKYEYSKE-DLKDVQCYICKSFGHLC--CVEPG------NSLSWAVSCYRCGQLGHSG 297
Query: 248 RDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG-------GRESA 406
C + + S + CY C + GH AR CP GRES
Sbjct: 298 LACGRHYEESNENDSA--TPERLFNSREASECYRCGEEGHFARECPNSSSISTSHGRESQ 355
Query: 407 TQTCYNCN 430
T CY CN
Sbjct: 356 T-LCYRCN 362
Score = 40.3 bits (90), Expect = 5e-04
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 107 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 232
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 58.0 bits (134), Expect = 3e-09
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKE------EADRCY 280
C+ C+ H A+ C + R+ + C +C R GH ++C E E CY
Sbjct: 76 CFICHSKTHIAKLCPEKSEWERN-------KICLQCRRRGHSLKNCPEKNNESSEKKLCY 128
Query: 281 RCNGTGHIARECAQSPDE-----PSCYNCNKTGHIARNCPE 388
C TGH C ++ SC+ C GHI++NCPE
Sbjct: 129 NCGDTGHSLSHCPYPMEDGGTKFASCFICKGQGHISKNCPE 169
Score = 54.4 bits (125), Expect = 3e-08
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD------ 271
+ +C +C R GH + C + + + +++ C+ C TGH C +
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTGHSLSHCPYPMEDGGTKF 151
Query: 272 -RCYRCNGTGHIARECAQS-----PDEPSCYNCNKTGHIARNCPEGGRESATQ 412
C+ C G GHI++ C ++ P C C H+ ++CP+ + + Q
Sbjct: 152 ASCFICKGQGHISKNCPENKHGIYPMGGCCKVCGSVAHLVKDCPDKFNQESAQ 204
Score = 53.6 bits (123), Expect = 5e-08
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Frame = +2
Query: 209 EKCFKCNRTGHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKT 361
E CF C+ H A+ C E+++ C +C GH + C + +E S CYNC T
Sbjct: 74 EGCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDT 133
Query: 362 GHIARNCPEGGRESATQ--TCYNC 427
GH +CP + T+ +C+ C
Sbjct: 134 GHSLSHCPYPMEDGGTKFASCFIC 157
Score = 33.9 bits (74), Expect = 0.048
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Frame = +2
Query: 182 RDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRC-NGTGHIARECAQSPDEPSCYNCNK 358
+D ++++ FK + G DR R + T H R P E C+ C+
Sbjct: 30 KDPNKKKKKKSLFKKKKPG-------SSTDRPQRTGSSTRHPLRVPGMKPGE-GCFICHS 81
Query: 359 TGHIARNCPEGGRESATQTCYNCNK 433
HIA+ CPE + C C +
Sbjct: 82 KTHIAKLCPEKSEWERNKICLQCRR 106
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 212 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 328
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 47.6 bits (108), Expect = 4e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 272 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 382
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 136
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 259
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 137
Score = 31.9 bits (69), Expect = 0.19
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 326 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
P C+NC GH AR+C G ++ CY C +
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGE 128
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 212 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 328
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 47.6 bits (108), Expect = 4e-06
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2
Query: 272 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 382
RC+ C GH AR+C + CY C + GHI RNC
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNC 95
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 259
S C+ C GH+AR+CT G + KC++C GH R+CK
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCK 96
Score = 31.9 bits (69), Expect = 0.19
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 326 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
P C+NC GH AR+C G ++ CY C +
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGE 87
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 212 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 328
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 59 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 266 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 424
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 57 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 283
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 104
Score = 31.5 bits (68), Expect = 0.25
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 326 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
P C+NC GH AR+C G ++ CY C +
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKN---KCYRCGE 87
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSG 193
CY+C GH R C R SG
Sbjct: 82 CYRCGERGHIERNCKNSPKKLRRSG 106
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 212 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 328
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 70 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 110
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 266 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 424
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 68 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 283
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 115
Score = 31.5 bits (68), Expect = 0.25
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 326 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
P C+NC GH AR+C G ++ CY C +
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKN---KCYRCGE 98
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSG 193
CY+C GH R C R SG
Sbjct: 93 CYRCGERGHIERNCKNSPKKLRRSG 117
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 50.8 bits (116), Expect = 4e-07
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 212 KCFKCNRTGHFARDCK--EEADRCYRCNGTGHIARECAQSP 328
+CF C GH+ARDC + ++CYRC GHI R C SP
Sbjct: 100 RCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 49.2 bits (112), Expect = 1e-06
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +2
Query: 266 ADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 424
A RC+ C GH AR+C + CY C + GHI RNC ++ Y+
Sbjct: 98 AGRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 41.9 bits (94), Expect = 2e-04
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYR 283
C+ C GH+AR+CT G + KC++C GH R+CK + R
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERGHIERNCKNSPKKLRR 145
Score = 31.5 bits (68), Expect = 0.25
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 326 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
P C+NC GH AR+C G ++ CY C +
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKN---KCYRCGE 128
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSG 193
CY+C GH R C R SG
Sbjct: 123 CYRCGERGHIERNCKNSPKKLRRSG 147
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 48.8 bits (111), Expect = 2e-06
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR----- 274
+ VC +C GH C S + + KC+ CN GH C E
Sbjct: 25 AEVCLRCGGFGHDMTLCKY-----EYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTV 77
Query: 275 -CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC 382
CYRC GH C + D+ PSC+ C + GH C
Sbjct: 78 SCYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQC 117
Score = 46.0 bits (104), Expect = 1e-05
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDCKEEAD-------RCYRCNGTGHIARECAQSPDEP-----SCY 346
+ E C +C GH CK E +CY CN GH+ C P SCY
Sbjct: 24 EAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHL---CCIEPGHTQSWTVSCY 80
Query: 347 NCNKTGHIARNCPEGGRESATQTCYNCNK 433
C + GH C +S + +C+ C +
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICGR 109
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 421
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 422 NCNK 433
C +
Sbjct: 81 RCGQ 84
Score = 39.1 bits (87), Expect = 0.001
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 20/116 (17%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVV------------SRDSGFNRQREKCFKCNRTGHFARD 253
S C+ C R GHF +C V DS R +E + GHF
Sbjct: 101 SPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPDSSSVRFQENTRE-EEEGHFEHQ 159
Query: 254 CKEEADRCYR--CNGTGHIARECAQSPDEPS------CYNCNKTGHIARNCPEGGR 397
C + + C++ G I+ + CY C GHIAR+CP +
Sbjct: 160 CPDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQ 215
Score = 37.9 bits (84), Expect = 0.003
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +2
Query: 107 SSSVCYKCN----RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADR 274
SSSV ++ N GHF +C V +R+ E N + +E
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCFQE-ISRE-EGFISLNSSSKSTSKGRETRRL 196
Query: 275 CYRCNGTGHIARECAQS 325
CY C G GHIAR+C S
Sbjct: 197 CYECKGKGHIARDCPNS 213
Score = 29.9 bits (64), Expect = 0.77
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 59 YISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 178
+IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 177 FISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 48.4 bits (110), Expect = 2e-06
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Frame = +2
Query: 167 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC------------YRCNGTGHIAR 310
GG R G R C+KC GH ARDC E Y G G+
Sbjct: 116 GGYGGRGGG-GRGGSDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGG 174
Query: 311 ECAQSPDEPSCYNCNKTGHIARNCPEGGR 397
SCY+C ++GH AR+C GGR
Sbjct: 175 GRGGGGGGGSCYSCGESGHFARDCTSGGR 203
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 113 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFA--RDCKEEADRCYRC 286
S CYKC GH AR+C++GG G + G+ R CY C
Sbjct: 129 SDCYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSC 188
Query: 287 NGTGHIAREC 316
+GH AR+C
Sbjct: 189 GESGHFARDC 198
Score = 37.5 bits (83), Expect = 0.004
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGG 172
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 48.4 bits (110), Expect = 2e-06
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +2
Query: 167 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP--S 340
GG S G CFKC GH AR+C + G G S
Sbjct: 122 GGRGSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLS 181
Query: 341 CYNCNKTGHIARNCPEGG 394
CY+C ++GH AR+C GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 46.8 bits (106), Expect = 6e-06
Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQ-GGVVSRDSGFNRQRE-----------KCFKCNRTGHFARDC 256
C+KC GH AREC+Q GG S G R C+ C +GHFARDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 37.5 bits (83), Expect = 0.004
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGG 172
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 44.0 bits (99), Expect = 4e-05
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQG-GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGT 295
C C GH R C + +V++ G + + KC C GH +R C++ C+G
Sbjct: 292 CRGCGGKGHNRRTCPKSKSIVTK--GISTRYHKCGICGERGHNSRTCRKPTGVNPSCSGE 349
Query: 296 GHIARECAQSPDEPSCYNCNKTGHIARNCP 385
+ E +C C K GH R CP
Sbjct: 350 N--SGEDGVGKITYACGFCKKMGHNVRTCP 377
Score = 34.3 bits (75), Expect = 0.036
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Frame = +2
Query: 134 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARE 313
+TG F++ ++ RD + QR K + AR E+ + + N R
Sbjct: 200 KTGLFSKRMK---IIHRDPVLHAQRVAAIKKAKGTPAARKHASESMKAFFSNPVNREQRS 256
Query: 314 CAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCYNC 427
+ + C NC + GH CPE G + + C C
Sbjct: 257 LSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCRGC 295
Score = 33.1 bits (72), Expect = 0.083
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 15/71 (21%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKE---EADRCYR---CNGTGHIARECAQSPD---------EPSCYN 349
C C + GH C E ADR +R C G GH R C +S C
Sbjct: 266 CKNCGQEGHRRHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGI 325
Query: 350 CNKTGHIARNC 382
C + GH +R C
Sbjct: 326 CGERGHNSRTC 336
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +2
Query: 275 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNC 427
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWC 92
Score = 37.1 bits (82), Expect = 0.005
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTG 298
CYKC + GHFAR C VV++ + C+ C+ GH + C + R + N G
Sbjct: 36 CYKCGKLGHFARSC---HVVTQPT---TAYITCYFCSEEGHRSNGCPNK--RTDQVNPKG 87
Query: 299 H 301
H
Sbjct: 88 H 88
Score = 34.3 bits (75), Expect = 0.036
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 329 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNK 433
D +CY C K GH AR+C + +A TCY C++
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSE 67
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 167 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 271
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.25
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGG 172
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.34
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 332 EPSCYNCNKTGHIARNCPEGG 394
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.44
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 236 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 334
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +2
Query: 167 GGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEAD 271
GG SR G ++CFKC R GH+ARDC D
Sbjct: 104 GGYSSRGKG---TEDECFKCRRPGHWARDCPSTGD 135
Score = 31.5 bits (68), Expect = 0.25
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGG 172
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.34
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 332 EPSCYNCNKTGHIARNCPEGG 394
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 30.7 bits (66), Expect = 0.44
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 236 GHFARDCKEEADRCYRCNGTGHIARECAQSPDE 334
G ++ K D C++C GH AR+C + D+
Sbjct: 104 GGYSSRGKGTEDECFKCRRPGHWARDCPSTGDD 136
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 9/40 (22%)
Frame = +2
Query: 182 RDSGFNRQREK---------CFKCNRTGHFARDCKEEADR 274
RD G++R R + CFKC + GHFAR+C E+ R
Sbjct: 100 RDRGYDRDRSRPSGGRGGGDCFKCGKPGHFARECPSESSR 139
Score = 34.3 bits (75), Expect = 0.036
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSG 193
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.3 bits (65), Expect = 0.59
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 341 CYNCNKTGHIARNCP-EGGRE 400
C+ C K GH AR CP E R+
Sbjct: 120 CFKCGKPGHFARECPSESSRD 140
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 164 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 316
QGG RD+ +R R++ + +R+ C++C GH AREC
Sbjct: 87 QGGA-GRDNDGDRGRDRGYDRDRSRPSGG---RGGGDCFKCGKPGHFAREC 133
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 104 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 208
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 164 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 259
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.25
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 176 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 316
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 0.77
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 329 DEPSCYNCNKTGHIARNCPEG 391
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 104 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 208
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 164 QGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 259
+GG R G + KC++C GHFAR+C+
Sbjct: 76 RGGGGGRRGGI--EDSKCYECGELGHFARECR 105
Score = 31.5 bits (68), Expect = 0.25
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 176 VSRDSGFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 316
+ R +G+ + K R G R E +CY C GH AREC
Sbjct: 58 LDRKNGWRVELSHKDKGGRGGGGGRRGGIEDSKCYECGELGHFAREC 104
Score = 29.9 bits (64), Expect = 0.77
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 329 DEPSCYNCNKTGHIARNCPEG 391
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.003
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 208
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 33.9 bits (74), Expect = 0.048
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 212 KCFKCNRTGHFARDCK 259
KC++C TGHFAR+C+
Sbjct: 100 KCYECGETGHFARECR 115
Score = 31.1 bits (67), Expect = 0.34
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 272 RCYRCNGTGHIAREC 316
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 0.59
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2
Query: 341 CYNCNKTGHIARNCPEGG 394
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 37.1 bits (82), Expect = 0.005
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDC 256
Q+EKCF C +TGHFA DC
Sbjct: 261 QQEKCFVCGQTGHFASDC 278
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 302 IARECAQSP-DEPSCYNCNKTGHIARNCP 385
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 3.1
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 119 CYKCNRTGHFAREC 160
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.016
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 119 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 208
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 167 GGVVSRDSGFNRQRE--KCFKCNRTGHFARDCK 259
GG D G R KC++C +GHFAR+C+
Sbjct: 80 GGRGGGDGGRGRGGSDLKCYECGESGHFARECR 112
Score = 29.5 bits (63), Expect = 1.0
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 272 RCYRCNGTGHIAREC 316
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 341 CYNCNKTGHIARNCPEGG 394
CY C ++GH AR C G
Sbjct: 98 CYECGESGHFARECRSRG 115
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.021
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 385
CF C + GH RDC E D R + +I+ + C C + H A CP
Sbjct: 604 CFYCGKKGHCLRDCLEVTDTELR-DLVQNISVRNGREEASSLCIRCFQLSHWAATCP 659
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 293 TGHIARECAQSPDEPSCYNCNKTGHIARNCPE 388
+G +A + + C+ C K GH R+C E
Sbjct: 588 SGSLAENAEEEQRDLICFYCGKKGHCLRDCLE 619
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQ------GGVVSRDSGFNRQREK---CFKCNRTGHFARDC 256
+C+ C + GH R+C + +V S N + E C +C + H+A C
Sbjct: 603 ICFYCGKKGHCLRDCLEVTDTELRDLVQNISVRNGREEASSLCIRCFQLSHWAATC 658
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.7 bits (76), Expect = 0.027
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 209 EKCFKCNRTGHFARDC 256
++CFKC R GH+ARDC
Sbjct: 126 DECFKCGRVGHWARDC 141
Score = 32.7 bits (71), Expect = 0.11
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGG 172
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.15
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 332 EPSCYNCNKTGHIARNCPEGG 394
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 27.5 bits (58), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 269 DRCYRCNGTGHIAREC 316
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 33.1 bits (72), Expect = 0.083
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEA 268
CFKC R GH++RDC A
Sbjct: 8 CFKCGRPGHWSRDCPSSA 25
Score = 29.9 bits (64), Expect = 0.77
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQGGVVS 181
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 26.6 bits (56), Expect = 7.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 341 CYNCNKTGHIARNCP 385
C+ C + GH +R+CP
Sbjct: 8 CFKCGRPGHWSRDCP 22
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.11
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 272 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 394
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 31.9 bits (69), Expect = 0.19
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDCK 259
Q+E+CF C + GHFA +C+
Sbjct: 260 QQERCFLCGQMGHFASNCE 278
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 302 IARECAQSPDEPS-CYNCNKTGHIARNC 382
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.25
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 332 EPSCYNCNKTGHIARNCPEGGRESATQ 412
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 275 CYRCNGTGHIAREC 316
CYRC GHIA+ C
Sbjct: 227 CYRCKQEGHIAKIC 240
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.34
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Frame = +2
Query: 275 CYRCNGTGHIARECA-QSPDEP------SCYNCNKTGHIARNCP 385
C C T H+ +C SP P CY C GH++ CP
Sbjct: 287 CDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYCP 330
Score = 29.9 bits (64), Expect = 0.77
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 9/46 (19%)
Frame = +2
Query: 206 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 316
+ C C T H DC + +CY C G GH++ C
Sbjct: 284 KRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVSMYC 329
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 30.7 bits (66), Expect = 0.44
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +2
Query: 116 VCYKCNRTGHFAREC 160
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 0.44
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +2
Query: 215 CFKCNRTGHFARDC--KEEAD 271
C++C + GH ARDC KE +D
Sbjct: 926 CYRCKKVGHLARDCHGKETSD 946
Score = 30.3 bits (65), Expect = 0.59
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 341 CYNCNKTGHIARNC 382
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 0.77
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 275 CYRCNGTGHIAREC 316
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g48250.1 68418.m05961 zinc finger (B-box type) family protein
contains similarity to CONSTANS homologs
Length = 373
Score = 30.7 bits (66), Expect = 0.44
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADR---CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARN-C 382
C C+R H A + R C RCN R C+ C NC+ +GH +N
Sbjct: 25 CLSCDRNVHSANALSKRHSRTLVCERCNAQPASVR-CSDERVS-LCQNCDWSGHDGKNST 82
Query: 383 PEGGRESATQTCYN 424
+ T CY+
Sbjct: 83 TTSHHKRQTINCYS 96
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 281 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 394
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQGG 172
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADRCY 280
C +CN GHF + C D Y
Sbjct: 210 CHRCNIPGHFIQHCPTNGDPNY 231
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 30.3 bits (65), Expect = 0.59
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 394
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
Score = 29.9 bits (64), Expect = 0.77
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 329 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
D P C+NC H R CP SA + K
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQK 273
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 0.59
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 89 SKPIAMSSSVCYKCNRTGHFAREC 160
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +2
Query: 140 GHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCK 259
G++ R +G +++ G + + C++C H+A+ C+
Sbjct: 255 GNYGRSRGRGRGINKPRG--KAKSVCYRCGMDDHWAKTCR 292
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 0.59
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 116 VCYKCNRTGHFARECTQGG 172
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +2
Query: 281 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 394
R G G E P C+ CN +GH ++C G
Sbjct: 102 RMGGRG-FGMERTTPPPGYVCHRCNVSGHFIQHCSTNG 138
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 30.3 bits (65), Expect = 0.59
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +2
Query: 275 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 409
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 185 DSGFNRQREK-CFKCNRTGHFARDC 256
D G ++ R K CF C H AR+C
Sbjct: 77 DIGMSKARFKFCFNCGDMNHLARNC 101
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 0.59
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 397
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 329 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
D P C+NC H R CP SA +K
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHK 228
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 212 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 346
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 0.59
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 397
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.5 bits (63), Expect = 1.0
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 329 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
D P C+NC H R CP SA +K
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHK 228
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +2
Query: 212 KCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDE--PSCY 346
+CF C H R+C DR N R+ Q+P PS Y
Sbjct: 197 RCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSRLPSRY 243
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 0.77
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 257 KEEADRCYRCNGTGHIARECAQSP 328
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 215 CFKCNRTGHFARDC 256
CFKC T H A+DC
Sbjct: 342 CFKCGSTDHIAKDC 355
Score = 27.5 bits (58), Expect = 4.1
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 119 CYKCNRTGHFARECTQG 169
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +2
Query: 341 CYNCNKTGHIARNCPEG 391
C+ C T HIA++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At2g16690.1 68415.m01915 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 240
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 167 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 256
G VVS + R R++CF C R H DC
Sbjct: 188 GEVVSVTFDYERIRKRCFFCQRLTHDKADC 217
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.5 bits (63), Expect = 1.0
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Frame = +2
Query: 134 RTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARD---------CKEEADRCYRC 286
R+ + C + G ++ + ++E C K + A + C EE +R C
Sbjct: 778 RSNKDKQSCDKKGAKNKTRAEDDKQENCHKLSENNKTASEMLVSGTKVSCHEENNRVMNC 837
Query: 287 NGTGHIARECA 319
NG G +A E A
Sbjct: 838 NGRGSVAGEMA 848
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.1 bits (62), Expect = 1.4
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Frame = +2
Query: 107 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNR-QREKCFKCNRTGHFARDCKEEADRCYR 283
+S Y N T E GG + G + +R C++C GH + C +
Sbjct: 444 NSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSH 503
Query: 284 CNGT 295
N T
Sbjct: 504 TNST 507
Score = 26.6 bits (56), Expect = 7.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCP 385
+CY C + GH++ CP
Sbjct: 480 NCYECGEKGHLSTACP 495
Score = 26.6 bits (56), Expect = 7.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCP 385
+CY C + GH++ CP
Sbjct: 575 NCYECGEKGHLSSACP 590
Score = 26.2 bits (55), Expect = 9.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 341 CYNCNKTGHIARNCP 385
CY C + GH++ CP
Sbjct: 397 CYECGEKGHLSTACP 411
>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 418
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 167 GGVVSRDSGFNRQREKCFKCNRTGHFARDC 256
G +VS + R R++CF C R H DC
Sbjct: 188 GEIVSVTFDYERIRKRCFLCQRLTHEKGDC 217
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +2
Query: 248 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 424
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 425 C 427
C
Sbjct: 181 C 181
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 1.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 341 CYNCNKTGHIARNCP 385
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 104 MSSSVCYKCNRTGHFAREC 160
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
Score = 26.2 bits (55), Expect = 9.5
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2
Query: 215 CFKCNRTGHFARDC 256
CF C++ GH+A++C
Sbjct: 6 CFHCHQPGHWAKNC 19
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 28.7 bits (61), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 194 FNRQREKCFKCNRTGHFARDCKEEADR 274
F + KCF C + GH A DC+ + R
Sbjct: 259 FPGEEGKCFLCGQEGHRAADCEGKIKR 285
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCPE 388
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEE 265
CF C ++GH A DC ++
Sbjct: 728 CFICGKSGHRATDCPDK 744
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Frame = +2
Query: 275 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNC 382
C C+ T H EC P D CY C GH++ C
Sbjct: 298 CEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Frame = +2
Query: 206 REKCFKCNRTGHFARDC---------KEEADRCYRCNGTGHIAREC 316
+ C C+ T H +C ++ +CY C G GH++ C
Sbjct: 295 KRPCEICSHTDHPTEECLYPPQTIPYTDDYAKCYYCEGMGHMSMYC 340
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 302 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNK 433
++R+ ++S E +C+ C + GH +CP E + Y +
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQE 191
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 77 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 187
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 2.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECAQS 325
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 2.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 329 DEPSCYNCNKTGHIARNCPE 388
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 27.9 bits (59), Expect = 3.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 341 CYNCNKTGHIARNCPEGG 394
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +2
Query: 275 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 385
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 27.9 bits (59), Expect = 3.1
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +2
Query: 89 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGHFARDCKEEA 268
S+P + VC+ C GH C F REK NR + A D +
Sbjct: 618 SEPRRVFRPVCHHCGVVGHIRPRC-----------FRLLREK----NRLMN-AYDVRFHG 661
Query: 269 DRCYRCNGTGHIAREC 316
+CY GHI R C
Sbjct: 662 PKCYHYGVQGHIKRNC 677
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 14/50 (28%)
Frame = +2
Query: 275 CYRCNGTGHIARECAQSPDE--------------PSCYNCNKTGHIARNC 382
C+ C GHI C + E P CY+ GHI RNC
Sbjct: 628 CHHCGVVGHIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGHIKRNC 677
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +2
Query: 284 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 385
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +2
Query: 209 EKCFKCNRTGHFARDCKEEADRCYRCNGTGHIAREC 316
E+C + + DC +CY C G GH++ C
Sbjct: 347 EQCLHPPQAMPYMVDCA----KCYSCGGVGHVSMYC 378
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)
Frame = +2
Query: 191 GFNRQREKCFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEP-----SCYNCN 355
GF R+R C+ C C+ C+ + A +P +P +CY
Sbjct: 1549 GFTRKRHNCYNCGLV------------HCHACSSKKALKAALAPTPGKPHRVCDACYTKL 1596
Query: 356 KTGHIARNCPEGGRESATQT 415
K G N R S T T
Sbjct: 1597 KAGESGYNSNVANRNSTTPT 1616
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 328 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL 420
G +V+ LQ DGPH ++R G AD+L
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVL 608
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Frame = +2
Query: 110 SSVCYKCNRTGHFARECTQGGVVSRDS---GFN-RQREKCFKCNRTGH--FARDCKEEAD 271
S+VC C + GH + C SR+S N R E CN G R EA+
Sbjct: 764 SNVCIHCQQRGHASTNCPSRVPASRNSRPTATNPRNDESTVSCNTCGSQCVLRTANTEAN 823
Query: 272 R 274
R
Sbjct: 824 R 824
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 416 RSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLPCNPSQSV 237
RS + P D +V+ CC+C ++ S +T + QCR + G C PS
Sbjct: 1039 RSYEENSETPSDDAVKSDVCCCTC---SKSSSCKT--MKCQCR--ATKGS---CGPS--- 1085
Query: 236 LCGCT 222
CGC+
Sbjct: 1086 -CGCS 1089
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 101 AMSSSVCYKCNRTGHFARECTQGGV-VSRDS 190
A ++S C KC + GH+ EC V +SR S
Sbjct: 94 ASAASQCQKCFQAGHWTYECKNERVYISRPS 124
>At5g32613.1 68418.m03881 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 457
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Frame = +2
Query: 296 GHIARECAQSP-DEPSCYNCNKTGHIARNC 382
G+ AR P P C NC + GH+ C
Sbjct: 299 GNTARVAVTYPRPPPKCLNCGRYGHLLSRC 328
>At5g13920.1 68418.m01628 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 415
Score = 27.1 bits (57), Expect = 5.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 203 QREKCFKCNRTGHFARDC 256
Q CF+C + GH+ DC
Sbjct: 7 QTGDCFRCRQAGHWINDC 24
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = +2
Query: 275 CYRCNGTGHIAREC---AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNC 427
C+RC GH +C + + D P C G RE+ + Y C
Sbjct: 11 CFRCRQAGHWINDCPLKSYTDDPPPAIQCPCGGGFCEIKVANTRENPGRKFYKC 64
>At4g10630.1 68417.m01737 glutaredoxin family protein contains Pfam
profile PF00462: Glutaredoxin
Length = 334
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 275 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 385
C+RCNG+ + + + C CN+ G + CP
Sbjct: 297 CFRCNGSCKMVKGWGSASVVVRCNECNENGLVP--CP 331
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 410 ASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALCA 297
AS+TP P + G C C SVR + +CA
Sbjct: 701 ASKTPNAPAKTKTGAGMPCSLCPHPTCQHSVRNQGVCA 738
>At1g28210.2 68414.m03463 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 427
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIAR----NC 382
C C+ GH C C G G + P SC C TGHI + +C
Sbjct: 186 CDSCDGLGH---PSDAAMSICPTCRGVGRVTIP----PFTASCQTCKGTGHIIKEYCMSC 238
Query: 383 PEGGRESATQT 415
G T+T
Sbjct: 239 RGSGIVEGTKT 249
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 275 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 415
C C GTGHI +E S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At1g28210.1 68414.m03462 DNAJ heat shock protein, putative strong
similarity to mitochondrial DnaJ protein (AtJ1)
GI:564030 from [Arabidopsis thaliana]; contains Pfam
profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal
region, PF00684: DnaJ central domain (4 repeats);
identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029
Length = 408
Score = 27.1 bits (57), Expect = 5.5
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Frame = +2
Query: 215 CFKCNRTGHFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIAR----NC 382
C C+ GH C C G G + P SC C TGHI + +C
Sbjct: 186 CDSCDGLGH---PSDAAMSICPTCRGVGRVTIP----PFTASCQTCKGTGHIIKEYCMSC 238
Query: 383 PEGGRESATQT 415
G T+T
Sbjct: 239 RGSGIVEGTKT 249
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +2
Query: 275 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQT 415
C C GTGHI +E S KT + P G AT T
Sbjct: 221 CQTCKGTGHIIKEYCMSCRGSGIVEGTKTAELV--IPGGVESEATIT 265
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 26.6 bits (56), Expect = 7.2
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Frame = -1
Query: 371 RCGPSCCSCNMTARPGSVRTRAL-CA--QCRYICSNGQPLPCNPSQSVLCGC 225
RCG SC G V R L C CR IC +G+ PC C C
Sbjct: 232 RCGHKQFSC------GDVCERVLDCNIHNCREICHDGECPPCRERAVYKCSC 277
>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1114
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -1
Query: 392 PPRDSSVRCGPSCCSCNMTARPGS---VRTRALCAQCRYICSNGQP 264
P +S RC S S N+T +P + + LC CR ICS+ P
Sbjct: 700 PMNPASNRCSVSLSSDNLTMQPPTDDRLPLSPLCPTCR-ICSSKLP 744
>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 790
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Frame = +2
Query: 266 ADRCYRCNGTGHIARECAQSPDEPS----CYNCNKTGH 367
AD CYRC + C Q + S CY C+K H
Sbjct: 36 ADLCYRCGSAYESSLFCEQFHKDQSGWRECYLCSKRLH 73
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +2
Query: 257 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN 430
+E C+ CNGTG AQ C C +G++ GG E C NC+
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCD 125
>At5g40320.1 68418.m04892 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 594
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 305 LCAQCRYICSNGQPLPCNPSQSVLCG 228
LC CR +CS + CN V CG
Sbjct: 386 LCTACRRLCSGFRYECCNIKLDVRCG 411
>At4g18970.1 68417.m02794 GDSL-motif lipase/hydrolase family protein
similar to family II lipases EXL3 GI:15054386, EXL1
GI:15054382, EXL2 GI:15054384 from [Arabidopsis
thaliana]; contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 361
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 152 ARNARSGCTCSKRLNSLRSV 93
A+N+R G TC +R+NS +
Sbjct: 228 AQNSRDGVTCDERINSANRI 247
>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
gibberellin-responsive protein 2 identical to SP|P46688
Gibberellin-regulated protein 2 precursor {Arabidopsis
thaliana}
Length = 99
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 170 GVVSRDSGFNRQREKCFKCNRTGHFARDCKEEADRC 277
GVV D G R +++C K +RT R C RC
Sbjct: 35 GVVKIDCG-GRCKDRCSKSSRTKLCLRACNSCCSRC 69
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 338 SCYNCNKTGHIARNCPEGGRESATQTCYNC 427
+CY+C + HI +CP + ++C+ C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFIC 171
>At3g17460.1 68416.m02229 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 198
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 425 SYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGS 321
S S ++S + APP SS C P C + N T P S
Sbjct: 83 SSSAASSSSSAPPPASSFTCQP-CSNPNFTFFPKS 116
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 281 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ 412
RC TG I EC S + S + N CP+G SA++
Sbjct: 40 RCLVTGAINFECDSSKNVNSSLSSNSVVTSGYACPQGFEASASR 83
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Frame = +2
Query: 260 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 430
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
>At2g19650.1 68415.m02296 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -1
Query: 368 CGPSCCSCNMTARPGSVRTRALCAQCRYICS 276
C P CC CN + VRT Y CS
Sbjct: 638 CRPLCCVCNSRCKLPFVRTLPEDGADLYFCS 668
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,195,628
Number of Sequences: 28952
Number of extensions: 178459
Number of successful extensions: 1061
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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