Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0925
         (333 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0FDQ8 Cluster: Putative uncharacterized protein; n=1; ...   121   3e-27
UniRef50_Q5MGF8 Cluster: Putative uncharacterized protein; n=1; ...    49   2e-05
UniRef50_Q8L9F8 Cluster: Mitochondrial carrier-like protein; n=1...    32   2.9  
UniRef50_A0FZL3 Cluster: Putative uncharacterized protein precur...    31   5.1  

>UniRef50_A0FDQ8 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 272

 Score =  121 bits (292), Expect = 3e-27
 Identities = 63/83 (75%), Positives = 63/83 (75%)
 Frame = +1

Query: 85  MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSXXXXXXXXXXXXXXXXXXX 264
           MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDS                   
Sbjct: 1   MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDSVKPTEVAAATEEKKAEPAP 60

Query: 265 XSNDEVPAIPEAKKDDIAPEDSD 333
            SNDEVPAIPEAKKDDIAPEDSD
Sbjct: 61  VSNDEVPAIPEAKKDDIAPEDSD 83


>UniRef50_Q5MGF8 Cluster: Putative uncharacterized protein; n=1;
           Lonomia obliqua|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 206

 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +1

Query: 82  KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPI 177
           +MKVLLLC+AFAAVS+AMPVAEEK  V   P+
Sbjct: 18  RMKVLLLCMAFAAVSMAMPVAEEKPEVAEVPV 49


>UniRef50_Q8L9F8 Cluster: Mitochondrial carrier-like protein; n=12;
           Magnoliophyta|Rep: Mitochondrial carrier-like protein -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 342

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = -2

Query: 212 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 108
           +T+SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>UniRef50_A0FZL3 Cluster: Putative uncharacterized protein
           precursor; n=1; Burkholderia phymatum STM815|Rep:
           Putative uncharacterized protein precursor -
           Burkholderia phymatum STM815
          Length = 110

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 85  MKVLLLCIAFAAVSLAMPVAEEKDVVPAQPI 177
           MK  + CIAFAA ++A+P   ++   PA  +
Sbjct: 1   MKTTVFCIAFAAAAVAVPAHADQPATPADKV 31


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,583,342
Number of Sequences: 1657284
Number of extensions: 3433363
Number of successful extensions: 8685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8662
length of database: 575,637,011
effective HSP length: 86
effective length of database: 433,110,587
effective search space used: 10394654088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)