Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0925
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   1.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    24   7.0  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    23   9.2  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 327 VFWGYIVLFGLWYSGYLVVTNW 262
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 130 AMPVAEEKDVVPAQPILEVAPKI 198
           A+PV  E   VP  P+  VAP++
Sbjct: 564 AVPVVPEALSVPQPPVAPVAPEV 586


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 67  TGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDDS 207
           T S  K+ +   CI+   + L +   E   V+P+  +  VAP +  S
Sbjct: 306 TNSNGKLNIGEFCISLYLIKLKLSGKELPKVLPSSMLSSVAPLMQKS 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,368
Number of Sequences: 5004
Number of extensions: 14398
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)