Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0925
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0616 - 26638438-26638638,26638890-26638971,26639054-266391...    27   3.7  
01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384           27   3.7  
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133...    26   6.4  
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975...    26   6.4  
10_08_0842 - 20954712-20957738                                         26   8.5  

>04_04_0616 -
           26638438-26638638,26638890-26638971,26639054-26639141,
           26639222-26639278,26641334-26641526
          Length = 206

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 130 AMPVAEEKDVV--PAQPILEVAPKIDDS 207
           A  VAEEK V+  PA P  E  P +DDS
Sbjct: 30  AKDVAEEKAVIPAPAPPAEEEKPPVDDS 57


>01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384
          Length = 335

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 52  KRRRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEV 186
           KR    G +  ++ LLLC+A AA + A+P A      P  P+ E+
Sbjct: 96  KRIGSAGDLGWIEYLLLCLAPAAAAAALPCAATSPTPPC-PLREL 139


>10_06_0085 +
           10511258-10512327,10512978-10513058,10513318-10513396,
           10514160-10514201
          Length = 423

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 58  RRVTGSIF--KMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPI 177
           RRV+G +F      LL+C   AA   A PVA       + P+
Sbjct: 219 RRVSGIVFLTSFAALLVCSVVAAAIAAPPVAAALAAAASMPV 260


>09_06_0198 -
           21496692-21496991,21497111-21497258,21497341-21497578,
           21497679-21497889,21497977-21498170,21498263-21498364,
           21498525-21499879,21501193-21501494,21501600-21501750,
           21501838-21502102,21502155-21502362,21502467-21502660,
           21502749-21502850,21503481-21503680,21504010-21504846,
           21505806-21506107,21506209-21506359,21506447-21506684,
           21506764-21506971,21507078-21507271,21507322-21507462,
           21513484-21514811,21515923-21516227,21516331-21516481,
           21516570-21516807,21516881-21517088,21517197-21517366,
           21517451-21517549,21517708-21519029,21521601-21521683
          Length = 3314

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 97  LLCIAFAAVSLAMPVAEEKDVVPAQPILEVAPKIDD 204
           L CI    + LA P A +  +VP +P+   A  + D
Sbjct: 39  LACITSVLILLAPPCASDDRLVPGKPLSPGATVVSD 74


>10_08_0842 - 20954712-20957738
          Length = 1008

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +1

Query: 28  NNLCQCFKKRRRV--TGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEVAP 192
           ++ C+  +  +RV   G ++K ++LLLC A   ++ A  + + +D    +P + + P
Sbjct: 560 HSACRTNRAGQRVLPNGHVWKPQLLLLCFASKVLAEANALLKLQDNPAGKPRMRIPP 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,610,904
Number of Sequences: 37544
Number of extensions: 93925
Number of successful extensions: 225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)