Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0925
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55742| Best HMM Match : Ribosomal_L13 (HMM E-Value=5.1)             27   5.0  
SB_11640| Best HMM Match : Peptidase_C12 (HMM E-Value=3.6)             26   8.8  

>SB_55742| Best HMM Match : Ribosomal_L13 (HMM E-Value=5.1)
          Length = 141

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 268 SNDEVPAIPEAKKDDIAPE 324
           SNDE PA+ E ++ D APE
Sbjct: 29  SNDESPALAEKERHDKAPE 47


>SB_11640| Best HMM Match : Peptidase_C12 (HMM E-Value=3.6)
          Length = 839

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 268 SNDEVPAIPEAKKDDIAPE 324
           SNDE PA+PE ++ D A E
Sbjct: 314 SNDESPALPEKERHDKALE 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,677,850
Number of Sequences: 59808
Number of extensions: 114251
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)