Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0925
         (333 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL136164-1|CAI20223.1|  451|Homo sapiens protein ( Human DNA seq...    28   7.9  
AK024732-1|BAB14980.1|  252|Homo sapiens protein ( Homo sapiens ...    28   7.9  

>AL136164-1|CAI20223.1|  451|Homo sapiens protein ( Human DNA
           sequence from clone RP3-331H24 on chromosome 6 Contains 
           the 5' end of a novel gene, the gene for a novel protein
           similar to  ).
          Length = 451

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +1

Query: 115 AAVSLAMPVAEEKDVVPAQPILEV-APKIDDSXXXXXXXXXXXXXXXXXXXXSNDEVPAI 291
           +AV L    AE+K V P +P+ E   P  + S                      ++    
Sbjct: 354 SAVHLNSKTAEDKKVAPKEPVEETDRPSPEPSNEAAKPRNTEKDSNAENMNSQPEKTVTT 413

Query: 292 PEAKKDDIAPEDSD 333
           P  KK+ ++PE+++
Sbjct: 414 PTEKKESVSPENNE 427


>AK024732-1|BAB14980.1|  252|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21079 fis, clone CAS02253. ).
          Length = 252

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +1

Query: 115 AAVSLAMPVAEEKDVVPAQPILEV-APKIDDSXXXXXXXXXXXXXXXXXXXXSNDEVPAI 291
           +AV L    AE+K V P +P+ E   P  + S                      ++    
Sbjct: 155 SAVHLNSKTAEDKKVAPKEPVEETDRPSPEPSNEAAKPRNTEKDSNAENMNSQPEKTVTT 214

Query: 292 PEAKKDDIAPEDSD 333
           P  KK+ ++PE+++
Sbjct: 215 PTEKKESVSPENNE 228


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,863,530
Number of Sequences: 237096
Number of extensions: 533131
Number of successful extensions: 952
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)