BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0925 (333 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL136164-1|CAI20223.1| 451|Homo sapiens protein ( Human DNA seq... 28 7.9 AK024732-1|BAB14980.1| 252|Homo sapiens protein ( Homo sapiens ... 28 7.9 >AL136164-1|CAI20223.1| 451|Homo sapiens protein ( Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the 5' end of a novel gene, the gene for a novel protein similar to ). Length = 451 Score = 27.9 bits (59), Expect = 7.9 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Frame = +1 Query: 115 AAVSLAMPVAEEKDVVPAQPILEV-APKIDDSXXXXXXXXXXXXXXXXXXXXSNDEVPAI 291 +AV L AE+K V P +P+ E P + S ++ Sbjct: 354 SAVHLNSKTAEDKKVAPKEPVEETDRPSPEPSNEAAKPRNTEKDSNAENMNSQPEKTVTT 413 Query: 292 PEAKKDDIAPEDSD 333 P KK+ ++PE+++ Sbjct: 414 PTEKKESVSPENNE 427 >AK024732-1|BAB14980.1| 252|Homo sapiens protein ( Homo sapiens cDNA: FLJ21079 fis, clone CAS02253. ). Length = 252 Score = 27.9 bits (59), Expect = 7.9 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Frame = +1 Query: 115 AAVSLAMPVAEEKDVVPAQPILEV-APKIDDSXXXXXXXXXXXXXXXXXXXXSNDEVPAI 291 +AV L AE+K V P +P+ E P + S ++ Sbjct: 155 SAVHLNSKTAEDKKVAPKEPVEETDRPSPEPSNEAAKPRNTEKDSNAENMNSQPEKTVTT 214 Query: 292 PEAKKDDIAPEDSD 333 P KK+ ++PE+++ Sbjct: 215 PTEKKESVSPENNE 228 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 35,863,530 Number of Sequences: 237096 Number of extensions: 533131 Number of successful extensions: 952 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 950 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 952 length of database: 76,859,062 effective HSP length: 80 effective length of database: 57,891,382 effective search space used: 1736741460 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -