Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0925
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   5.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   6.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   6.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   6.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   6.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    20   6.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   6.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   6.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   9.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   9.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   9.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   9.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  LCQCFKKRRRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKD 156
           +C+       V G    M+++LLC   A   + +   EEKD
Sbjct: 225 ICKLSHSNASVAGG---MEMILLCEKVAKEDIQVRFFEEKD 262


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 34  LCQCFKKRRRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKD 156
           +C+       V G    M+++LLC   A   + +   EEKD
Sbjct: 225 ICKLSHSNASVAGG---MEMILLCEKVAKEDIQVRFFEEKD 262


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 5.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 281 YPLYQRPKRTI*PQKT 328
           +P Y+RP+ T  P+ T
Sbjct: 156 HPRYKRPRTTFEPRAT 171


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 23  TLTICVSVLKSGVASQD 73
           TLT+ VSVL   +AS D
Sbjct: 85  TLTVNVSVLLLSLASPD 101


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 23  TLTICVSVLKSGVASQD 73
           TLT+ VSVL   +AS D
Sbjct: 85  TLTVNVSVLLLSLASPD 101


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 23  TLTICVSVLKSGVASQD 73
           TLT+ VSVL   +AS D
Sbjct: 136 TLTVNVSVLLLSLASPD 152


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 23  TLTICVSVLKSGVASQD 73
           TLT+ VSVL   +AS D
Sbjct: 85  TLTVNVSVLLLSLASPD 101


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 284 PLYQRPKRTI*PQKTP 331
           PLYQ+P+R    + TP
Sbjct: 238 PLYQQPERHYERRATP 253


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 34  LCQCFKKRRRVT 69
           +C+CF KRR  T
Sbjct: 77  ICKCFCKRRTNT 88


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 34  LCQCFKKRRRVT 69
           +C+CF KRR  T
Sbjct: 525 ICKCFCKRRTNT 536


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 140 WRRKRT*FPLNQF*KSRPKL 199
           WR +R  + L+QF   +P L
Sbjct: 175 WREERQAYYLHQFAPEQPDL 194


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 283 PAIPEAKKDDIAPEDSD 333
           P +PE KK+D   E  +
Sbjct: 208 PKVPEKKKEDEIDEGKE 224


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 140 WRRKRT*FPLNQF*KSRPKL 199
           WR +R  + L+QF   +P L
Sbjct: 175 WREERQAYYLHQFAPEQPDL 194


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 137 QWRRKRT*FPLNQF*KSRPKL 199
           QW  +R  + L+QF   +P L
Sbjct: 174 QWNEERKQYYLHQFATGQPDL 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,847
Number of Sequences: 438
Number of extensions: 1030
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)