Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0925
         (333 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26200.1 68418.m03118 mitochondrial substrate carrier family ...    32   0.11 
At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    29   1.0  
At4g02500.1 68417.m00341 galactosyl transferase GMA12/MNN10 fami...    26   5.5  

>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 342

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 17/35 (48%), Positives = 24/35 (68%)
 Frame = -2

Query: 212 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 108
           +T+SS+  AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146


>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 274 DEVPAIPEAKKDDIAPE 324
           D+  +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213


>At4g02500.1 68417.m00341 galactosyl transferase GMA12/MNN10 family
           protein low similarity to
           alpha-1,2-galactosyltransferase, Schizosaccharomyces
           pombe [SP|Q09174]
          Length = 461

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 58  RRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEV 186
           RR+  ++ ++KV +LC+    V L   +   K   P Q + E+
Sbjct: 12  RRIQRALRQLKVTILCLLLTVVVLRSTIGAGKFGTPEQDLDEI 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,328,648
Number of Sequences: 28952
Number of extensions: 75507
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)