BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0925 (333 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 32 0.11 At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 1.0 At4g02500.1 68417.m00341 galactosyl transferase GMA12/MNN10 fami... 26 5.5 >At5g26200.1 68418.m03118 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein Length = 342 Score = 31.9 bits (69), Expect = 0.11 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = -2 Query: 212 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 108 +T+SS+ AT R+G + TTS + A G A LT+A A Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146 >At2g45800.1 68415.m05696 LIM domain-containing protein similar to PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain protein PLIM1 [Nicotiana tabacum] GI:5932418; contains Pfam profile PF00412: LIM domain Length = 226 Score = 28.7 bits (61), Expect = 1.0 Identities = 11/17 (64%), Positives = 14/17 (82%) Frame = +1 Query: 274 DEVPAIPEAKKDDIAPE 324 D+ +IPEAK+DD APE Sbjct: 197 DDTASIPEAKEDDAAPE 213 >At4g02500.1 68417.m00341 galactosyl transferase GMA12/MNN10 family protein low similarity to alpha-1,2-galactosyltransferase, Schizosaccharomyces pombe [SP|Q09174] Length = 461 Score = 26.2 bits (55), Expect = 5.5 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = +1 Query: 58 RRVTGSIFKMKVLLLCIAFAAVSLAMPVAEEKDVVPAQPILEV 186 RR+ ++ ++KV +LC+ V L + K P Q + E+ Sbjct: 12 RRIQRALRQLKVTILCLLLTVVVLRSTIGAGKFGTPEQDLDEI 54 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,328,648 Number of Sequences: 28952 Number of extensions: 75507 Number of successful extensions: 175 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 175 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 175 length of database: 12,070,560 effective HSP length: 71 effective length of database: 10,014,968 effective search space used: 390583752 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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