Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0924
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    28   1.1  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    27   1.9  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   1.9  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   1.9  
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    27   2.6  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    27   3.4  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   3.4  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   4.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   5.9  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    25   7.8  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    25   7.8  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    25   7.8  

>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
 Frame = +1

Query: 217 NSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVGLIE 396
           NS+P+ S+  S E     SDS  LS      S DE   T  +     +S+  + +   + 
Sbjct: 259 NSTPSESDSSSSESSSSVSDSSDLSSTSDSSSGDESSDTARQSSSDTISSNNVSVSVSLN 318

Query: 397 T---LDVPQTTLCSPSGVTKCSIVKCISVERGLDE 492
           T      PQ T  + +   +  +    S    ++E
Sbjct: 319 TANEFSFPQGTFKAENEAVESEVAPSSSTPPTVEE 353


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 151 FLKDKGGYWNRISKVQDSPLNCIPTTRGLIR 59
           ++   GG WN I +  ++P  CI   R L+R
Sbjct: 76  WILSNGGVWNGIDRANETP-GCIARRRNLLR 105


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +1

Query: 124 SSNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPL 303
           SSNP+  S+          S  + +RPL ++ S   +SN +    R G   +   +   L
Sbjct: 160 SSNPVTSSQQPPNDRSTLSSSQKAKRPLKRSYSEKNSSNAEPSGSRSGDRGTNVSTSGSL 219

Query: 304 LESNDEGIGT 333
           L+     IG+
Sbjct: 220 LDGIPPDIGS 229


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 124 SSNPLCPS-EMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSE 282
           SS P   S +M D  +GG  S    R  +++TN SP ++ D      + R+  E
Sbjct: 467 SSKPSTSSPDMTDAATGGRVSSSSFRDKILQTNFSPRSTIDSFSNISKKRNSEE 520


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 679 TIRTRKSHICHRNP*TEVDDHKTEVRTYLTRSYRLED 569
           T+R  K  +C+ +   E+D   +E  T L R+Y L D
Sbjct: 208 TVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPD 244


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +1

Query: 301 LLESNDEGI--GTDERVDDVPVSAKEMELVGLIETLDVPQTTLCSPSGVTKCSIVKCISV 474
           LL+S D  I       + ++ V+A+   LV  +  LD+    + SP    +C+ V CI+ 
Sbjct: 93  LLQSPDAEIQRAASVALGNLAVNAENKALVVKLNGLDLLIRQMMSPHVEVQCNAVGCITN 152

Query: 475 ERGLDE 492
              LDE
Sbjct: 153 LATLDE 158


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
 Frame = +1

Query: 130 NPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLE 309
           NP  P  M       G  CF RR  ++ T      S   SK     + DSE ++    L 
Sbjct: 5   NPPFPYSMTSDPESFGHECFTRRWGIILTGIEKDVSERLSKLASTSK-DSEVVAQGKPLL 63

Query: 310 SNDEGIGTDERVDD--VPVSAKEMELVGLIETL 402
           ++ E   +D + D   VP+  +  ++V   E L
Sbjct: 64  NDLEAFKSDIKNDRPLVPLEGEGQDIVEYNEEL 96


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -3

Query: 142 DKGGYWNRISKVQDSPLNCIPTT 74
           +KGG WNRI+K   +P++ +P++
Sbjct: 517 EKGGNWNRIAK---TPVSSVPSS 536


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 187  FQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESND 318
            +++RR   + + S   + +   +  +GRS S T SD   LE ++
Sbjct: 1513 YEKRRSGRQVSDSYVLNKNSKNKSNKGRSASYTFSDPSSLEDSN 1556


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 100 SPLNCIPTTRGLIRTELVHLSLTWR 26
           S +NC+PTT  L++   +  +L  R
Sbjct: 209 STINCVPTTNSLLKKSKIPFALVIR 233


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 220 SSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERV-DDVPVSAKEMEL 381
           SSPA S    + ++  + DSE +  +  +E  +E     E V DD   + +E E+
Sbjct: 375 SSPATSISVDEPQKDSKDDSEKVEKETEVERKEENEAEAEAVFDDWEAALEEPEV 429


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 20/80 (25%), Positives = 33/80 (41%)
 Frame = +1

Query: 268 RSDSETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQTTLCSPSGVTK 447
           RS+    +D+P  E   +G   DE     P S++  +  G  +T  +P+  L +   V  
Sbjct: 118 RSEVVRGADEPTEEEIKKGEAADENEKKEPTSSESKKQEGGDDTKGIPEFWLTAMKNVLS 177

Query: 448 CSIVKCISVERGLDEKVCLR 507
            S +     E  L   V +R
Sbjct: 178 LSEMITPEDEGALSHLVDIR 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,873
Number of Sequences: 5004
Number of extensions: 48044
Number of successful extensions: 117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)