BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0924 (690 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_1645 + 35024237-35024977 33 0.16 02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 33 0.28 02_05_0454 - 29135223-29135259,29135709-29135742,29136155-291362... 32 0.37 01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 31 1.1 04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 30 2.0 05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 29 2.6 04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 29 2.6 01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875... 29 2.6 03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 29 3.5 02_05_0063 - 25523140-25524405 29 3.5 10_08_0370 - 17259802-17261595 28 6.1 04_03_0687 + 18713603-18713962,18715318-18715539,18717068-187172... 28 6.1 01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225... 28 6.1 01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398 28 6.1 08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560... 28 8.0 03_05_1076 + 30180923-30181150,30181746-30181913,30182063-301822... 28 8.0 >04_04_1645 + 35024237-35024977 Length = 246 Score = 33.5 bits (73), Expect = 0.16 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = +1 Query: 121 GSSNPLCP--SEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSE 282 G N C S S PSC Q R + +PA+++DD +RRR + + E Sbjct: 18 GGGNDACSLSSSSSTASSWQWPSCTQARTLSFARHDAPASADDDDSKRRRQQEEEE 73 >02_04_0591 - 24159654-24160155,24160233-24160316,24160898-24160944, 24161035-24161103,24161259-24161310,24161693-24161775, 24162312-24162422,24162808-24163211,24163308-24163380, 24163460-24163510,24163882-24164073,24164176-24164302, 24164753-24164934,24165023-24165226,24165738-24165836 Length = 759 Score = 32.7 bits (71), Expect = 0.28 Identities = 18/65 (27%), Positives = 33/65 (50%) Frame = +1 Query: 121 GSSNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDP 300 GSS L E P SGGG +R RP +N +P ++ + + +G++ + ++ P Sbjct: 578 GSSVQLKEGNAETPKSGGGDLPKKRGRPKGSSNGTPKSNISATSSKSKGKAARKDENETP 637 Query: 301 LLESN 315 + S+ Sbjct: 638 KVGSD 642 >02_05_0454 - 29135223-29135259,29135709-29135742,29136155-29136233, 29136330-29136623,29136727-29136861,29136956-29137222, 29137309-29137581 Length = 372 Score = 32.3 bits (70), Expect = 0.37 Identities = 23/74 (31%), Positives = 31/74 (41%) Frame = +1 Query: 121 GSSNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDP 300 G PL P GS GG F++RRP + + SN K R+RG+ + P Sbjct: 60 GGEPPLAPEASNGSGSSGGGGSFRKRRP----DDAKGESNSICK-RQRGKQQQQQQPCHP 114 Query: 301 LLESNDEGIGTDER 342 + G G ER Sbjct: 115 DQMAAAVGKGRPER 128 >01_07_0019 + 40494709-40494767,40495619-40495703,40495777-40495836, 40495934-40496044,40496127-40496204,40496276-40496347, 40496944-40497057,40498034-40498538,40499011-40499108, 40499185-40499215,40499346-40499520,40499849-40500008, 40501436-40501855,40502313-40503203 Length = 952 Score = 30.7 bits (66), Expect = 1.1 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Frame = +1 Query: 193 RRRPLMKTNSSPAASNDDSKERRRGRSDSETLS----DDPLLESNDEGIGTDERVDDVPV 360 +RR K ++ A NDD E G +DSE S DD E+ D G+DE D+ P Sbjct: 194 KRRKSRKQSTEAAKENDD--EDDEGPADSEDASMGEEDDEDSEAKDNA-GSDEEPDEPPA 250 Query: 361 SAK 369 K Sbjct: 251 KKK 253 >04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 Length = 327 Score = 29.9 bits (64), Expect = 2.0 Identities = 18/52 (34%), Positives = 28/52 (53%) Frame = +1 Query: 307 ESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQTTLCSPSGVTKCSIVK 462 E +G T+E + VP++ K+ +L+ ETLDV Q + S V CS + Sbjct: 262 EGGLKGATTNEESNAVPLAQKKRKLLAAAETLDVKQNS--SSVMVRPCSTAR 311 >05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617, 2643625-2643730,2643770-2644349,2645780-2645871, 2645969-2646035,2646126-2646231,2646628-2646708, 2646789-2647058,2647158-2648788,2648834-2649385, 2650602-2651324,2651451-2651526 Length = 1486 Score = 29.5 bits (63), Expect = 2.6 Identities = 18/52 (34%), Positives = 25/52 (48%) Frame = +1 Query: 241 DDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVGLIE 396 +DS E R D E LS D + S+DEG+ DER + + G +E Sbjct: 197 EDSDEERDDDGDDE-LSVDTQVLSDDEGLSNDEREVIFDMGGSNTRVKGALE 247 >04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 Length = 326 Score = 29.5 bits (63), Expect = 2.6 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = +1 Query: 307 ESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQTT 420 E +G T+E + VP++ K+ +L+ ETLDV Q + Sbjct: 262 EGGLKGATTNEESNAVPLAQKKRKLLAAAETLDVKQNS 299 >01_06_0880 + 32687018-32687060,32687142-32687219,32687323-32687532, 32687868-32689744 Length = 735 Score = 29.5 bits (63), Expect = 2.6 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = +1 Query: 238 NDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQT 417 N D ++ RG +L D L + ND+ DD P+S KE+E V ++P+T Sbjct: 80 NKDLDDKNRG-----SLQDHSLTQDNDQSCHLPSTQDDEPLSNKEIERV-----TNLPET 129 Query: 418 T 420 T Sbjct: 130 T 130 >03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105, 30326409-30326798,30326896-30330060 Length = 2144 Score = 29.1 bits (62), Expect = 3.5 Identities = 16/45 (35%), Positives = 18/45 (40%) Frame = +1 Query: 151 MEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSET 285 M PGSGGG R R +S S R RG +D T Sbjct: 1 MAKPGSGGGAEAHARSRKYDYVENSNLVLGSGSGSRPRGGADEHT 45 >02_05_0063 - 25523140-25524405 Length = 421 Score = 29.1 bits (62), Expect = 3.5 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +1 Query: 142 PSEMEDPGSGGGPSCFQRRR 201 P EDPG+G GPS ++R+R Sbjct: 175 PEFAEDPGAGPGPSSWKRKR 194 >10_08_0370 - 17259802-17261595 Length = 597 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/41 (26%), Positives = 25/41 (60%) Frame = +1 Query: 376 ELVGLIETLDVPQTTLCSPSGVTKCSIVKCISVERGLDEKV 498 +L ++ L+ + + CSPSG+T ++++C+ +R D + Sbjct: 220 QLSSALQVLEDMRFSGCSPSGITFNTLIRCMFNQRMYDRAI 260 >04_03_0687 + 18713603-18713962,18715318-18715539,18717068-18717256, 18717419-18717612,18718193-18718328 Length = 366 Score = 28.3 bits (60), Expect = 6.1 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +1 Query: 379 LVGLIETLDVPQTTLCSPSGVTKCSIVKCISVERGLDEK 495 L L ETL+ T + PSGV K S++ + + + E+ Sbjct: 147 LSALEETLEGQTTVIVGPSGVGKSSLINALRSNQNISEE 185 >01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615, 2250707-2250955,2251047-2251176,2251473-2251564, 2251735-2251855,2251940-2252028,2252149-2252271, 2252379-2252506,2253039-2253147,2253701-2254000 Length = 607 Score = 28.3 bits (60), Expect = 6.1 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Frame = +1 Query: 196 RRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIG--TDERVDDVPVSAK 369 RR + A +DD +E ++ S S + SD+ ++ +EG G D+ + S K Sbjct: 13 RRRRRRRGPYAAPDDDDEEEDQQEASSSSSSSDEGEEDAEEEGSGEVDDDDGEAAEPSGK 72 Query: 370 EMELVGLIETLDVPQTTLCSPSGVTKCSIVKCISVERGLDEKV---CLRPPTLL 522 E E+ + + + S C + K E G V C R P L Sbjct: 73 EEEVSPVAAAARSGRKASITISLKKVCKVCKSTGHEAGFKGAVYIDCPRKPCFL 126 >01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398 Length = 240 Score = 28.3 bits (60), Expect = 6.1 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +1 Query: 124 SSNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGR 270 SS P PG GGGP+ + RR +S + + RRRGR Sbjct: 148 SSEPAMGQTEGRPGGGGGPALQRLRRHAAGKVASRSLARCREGARRRGR 196 >08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248, 5605146-5605217,5605218-5605373,5605458-5605748 Length = 595 Score = 27.9 bits (59), Expect = 8.0 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Frame = +1 Query: 211 KTNSSPAASNDDSKERRRGRSD-SETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVG 387 +++ +S++DS ++R SD E + P +S D G+D + S KE + + Sbjct: 340 ESDQDNGSSDEDSDDKRDQESDHDEDVPSSPYSDSKDSCDGSDSECESYESSDKEGDDLE 399 Query: 388 LIETLDVPQTTLCSPSGVT 444 ++ D+ + + G+T Sbjct: 400 DCDSNDMLENLIKVARGLT 418 >03_05_1076 + 30180923-30181150,30181746-30181913,30182063-30182281, 30182827-30182872,30183708-30183943,30184065-30184079, 30185749-30186061,30186189-30186403,30186598-30186600 Length = 480 Score = 27.9 bits (59), Expect = 8.0 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 4/95 (4%) Frame = +1 Query: 175 GPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSE---TLSDDPLLESNDEGIGTDE-R 342 G S + RR + + +DD E G S+ DD E DEGIG +E R Sbjct: 379 GLSRSKHRRKHQRRRHEFSDDDDDDDEESSGSRKSKLGGAAGDDDDEEEEDEGIGGEELR 438 Query: 343 VDDVPVSAKEMELVGLIETLDVPQTTLCSPSGVTK 447 D + KEM L ++++ + G K Sbjct: 439 ASD--IVRKEMGLEWMLKSASSGRAESSQAGGADK 471 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.314 0.135 0.402 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,762,484 Number of Sequences: 37544 Number of extensions: 331260 Number of successful extensions: 916 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 892 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 915 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1756684372 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.9 bits)
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