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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0924
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1645 + 35024237-35024977                                         33   0.16 
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609...    33   0.28 
02_05_0454 - 29135223-29135259,29135709-29135742,29136155-291362...    32   0.37 
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958...    31   1.1  
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388     30   2.0  
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264...    29   2.6  
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253     29   2.6  
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875...    29   2.6  
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251...    29   3.5  
02_05_0063 - 25523140-25524405                                         29   3.5  
10_08_0370 - 17259802-17261595                                         28   6.1  
04_03_0687 + 18713603-18713962,18715318-18715539,18717068-187172...    28   6.1  
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225...    28   6.1  
01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398           28   6.1  
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560...    28   8.0  
03_05_1076 + 30180923-30181150,30181746-30181913,30182063-301822...    28   8.0  

>04_04_1645 + 35024237-35024977
          Length = 246

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 121 GSSNPLCP--SEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSE 282
           G  N  C   S      S   PSC Q R      + +PA+++DD  +RRR + + E
Sbjct: 18  GGGNDACSLSSSSSTASSWQWPSCTQARTLSFARHDAPASADDDDSKRRRQQEEEE 73


>02_04_0591 -
           24159654-24160155,24160233-24160316,24160898-24160944,
           24161035-24161103,24161259-24161310,24161693-24161775,
           24162312-24162422,24162808-24163211,24163308-24163380,
           24163460-24163510,24163882-24164073,24164176-24164302,
           24164753-24164934,24165023-24165226,24165738-24165836
          Length = 759

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = +1

Query: 121 GSSNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDP 300
           GSS  L     E P SGGG    +R RP   +N +P ++   +  + +G++  +  ++ P
Sbjct: 578 GSSVQLKEGNAETPKSGGGDLPKKRGRPKGSSNGTPKSNISATSSKSKGKAARKDENETP 637

Query: 301 LLESN 315
            + S+
Sbjct: 638 KVGSD 642


>02_05_0454 -
           29135223-29135259,29135709-29135742,29136155-29136233,
           29136330-29136623,29136727-29136861,29136956-29137222,
           29137309-29137581
          Length = 372

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 23/74 (31%), Positives = 31/74 (41%)
 Frame = +1

Query: 121 GSSNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDP 300
           G   PL P      GS GG   F++RRP    + +   SN   K R+RG+   +     P
Sbjct: 60  GGEPPLAPEASNGSGSSGGGGSFRKRRP----DDAKGESNSICK-RQRGKQQQQQQPCHP 114

Query: 301 LLESNDEGIGTDER 342
              +   G G  ER
Sbjct: 115 DQMAAAVGKGRPER 128


>01_07_0019 +
           40494709-40494767,40495619-40495703,40495777-40495836,
           40495934-40496044,40496127-40496204,40496276-40496347,
           40496944-40497057,40498034-40498538,40499011-40499108,
           40499185-40499215,40499346-40499520,40499849-40500008,
           40501436-40501855,40502313-40503203
          Length = 952

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 193 RRRPLMKTNSSPAASNDDSKERRRGRSDSETLS----DDPLLESNDEGIGTDERVDDVPV 360
           +RR   K ++  A  NDD  E   G +DSE  S    DD   E+ D   G+DE  D+ P 
Sbjct: 194 KRRKSRKQSTEAAKENDD--EDDEGPADSEDASMGEEDDEDSEAKDNA-GSDEEPDEPPA 250

Query: 361 SAK 369
             K
Sbjct: 251 KKK 253


>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
          Length = 327

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 307 ESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQTTLCSPSGVTKCSIVK 462
           E   +G  T+E  + VP++ K+ +L+   ETLDV Q +  S   V  CS  +
Sbjct: 262 EGGLKGATTNEESNAVPLAQKKRKLLAAAETLDVKQNS--SSVMVRPCSTAR 311


>05_01_0334 -
           2642998-2643063,2643125-2643169,2643552-2643617,
           2643625-2643730,2643770-2644349,2645780-2645871,
           2645969-2646035,2646126-2646231,2646628-2646708,
           2646789-2647058,2647158-2648788,2648834-2649385,
           2650602-2651324,2651451-2651526
          Length = 1486

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 241 DDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVGLIE 396
           +DS E R    D E LS D  + S+DEG+  DER     +      + G +E
Sbjct: 197 EDSDEERDDDGDDE-LSVDTQVLSDDEGLSNDEREVIFDMGGSNTRVKGALE 247


>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
          Length = 326

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 307 ESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQTT 420
           E   +G  T+E  + VP++ K+ +L+   ETLDV Q +
Sbjct: 262 EGGLKGATTNEESNAVPLAQKKRKLLAAAETLDVKQNS 299


>01_06_0880 +
           32687018-32687060,32687142-32687219,32687323-32687532,
           32687868-32689744
          Length = 735

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +1

Query: 238 NDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQT 417
           N D  ++ RG     +L D  L + ND+        DD P+S KE+E V      ++P+T
Sbjct: 80  NKDLDDKNRG-----SLQDHSLTQDNDQSCHLPSTQDDEPLSNKEIERV-----TNLPET 129

Query: 418 T 420
           T
Sbjct: 130 T 130


>03_05_1091 +
           30322035-30322739,30322861-30324043,30324114-30325105,
           30326409-30326798,30326896-30330060
          Length = 2144

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 151 MEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSET 285
           M  PGSGGG     R R      +S       S  R RG +D  T
Sbjct: 1   MAKPGSGGGAEAHARSRKYDYVENSNLVLGSGSGSRPRGGADEHT 45


>02_05_0063 - 25523140-25524405
          Length = 421

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 142 PSEMEDPGSGGGPSCFQRRR 201
           P   EDPG+G GPS ++R+R
Sbjct: 175 PEFAEDPGAGPGPSSWKRKR 194


>10_08_0370 - 17259802-17261595
          Length = 597

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +1

Query: 376 ELVGLIETLDVPQTTLCSPSGVTKCSIVKCISVERGLDEKV 498
           +L   ++ L+  + + CSPSG+T  ++++C+  +R  D  +
Sbjct: 220 QLSSALQVLEDMRFSGCSPSGITFNTLIRCMFNQRMYDRAI 260


>04_03_0687 +
           18713603-18713962,18715318-18715539,18717068-18717256,
           18717419-18717612,18718193-18718328
          Length = 366

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 379 LVGLIETLDVPQTTLCSPSGVTKCSIVKCISVERGLDEK 495
           L  L ETL+   T +  PSGV K S++  +   + + E+
Sbjct: 147 LSALEETLEGQTTVIVGPSGVGKSSLINALRSNQNISEE 185


>01_01_0272 -
           2249662-2249721,2250110-2250335,2250419-2250615,
           2250707-2250955,2251047-2251176,2251473-2251564,
           2251735-2251855,2251940-2252028,2252149-2252271,
           2252379-2252506,2253039-2253147,2253701-2254000
          Length = 607

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
 Frame = +1

Query: 196 RRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIG--TDERVDDVPVSAK 369
           RR   +     A  +DD +E ++  S S + SD+   ++ +EG G   D+  +    S K
Sbjct: 13  RRRRRRRGPYAAPDDDDEEEDQQEASSSSSSSDEGEEDAEEEGSGEVDDDDGEAAEPSGK 72

Query: 370 EMELVGLIETLDVPQTTLCSPSGVTKCSIVKCISVERGLDEKV---CLRPPTLL 522
           E E+  +       +    + S    C + K    E G    V   C R P  L
Sbjct: 73  EEEVSPVAAAARSGRKASITISLKKVCKVCKSTGHEAGFKGAVYIDCPRKPCFL 126


>01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398
          Length = 240

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 124 SSNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGR 270
           SS P        PG GGGP+  + RR      +S + +      RRRGR
Sbjct: 148 SSEPAMGQTEGRPGGGGGPALQRLRRHAAGKVASRSLARCREGARRRGR 196


>08_01_0648 +
           5602454-5602513,5602913-5603000,5603128-5604248,
           5605146-5605217,5605218-5605373,5605458-5605748
          Length = 595

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +1

Query: 211 KTNSSPAASNDDSKERRRGRSD-SETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVG 387
           +++    +S++DS ++R   SD  E +   P  +S D   G+D   +    S KE + + 
Sbjct: 340 ESDQDNGSSDEDSDDKRDQESDHDEDVPSSPYSDSKDSCDGSDSECESYESSDKEGDDLE 399

Query: 388 LIETLDVPQTTLCSPSGVT 444
             ++ D+ +  +    G+T
Sbjct: 400 DCDSNDMLENLIKVARGLT 418


>03_05_1076 +
           30180923-30181150,30181746-30181913,30182063-30182281,
           30182827-30182872,30183708-30183943,30184065-30184079,
           30185749-30186061,30186189-30186403,30186598-30186600
          Length = 480

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
 Frame = +1

Query: 175 GPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSE---TLSDDPLLESNDEGIGTDE-R 342
           G S  + RR   +     +  +DD  E   G   S+      DD   E  DEGIG +E R
Sbjct: 379 GLSRSKHRRKHQRRRHEFSDDDDDDDEESSGSRKSKLGGAAGDDDDEEEEDEGIGGEELR 438

Query: 343 VDDVPVSAKEMELVGLIETLDVPQTTLCSPSGVTK 447
             D  +  KEM L  ++++    +       G  K
Sbjct: 439 ASD--IVRKEMGLEWMLKSASSGRAESSQAGGADK 471


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,484
Number of Sequences: 37544
Number of extensions: 331260
Number of successful extensions: 916
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)

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