Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0924
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1645 + 35024237-35024977 33 0.16
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 33 0.28
02_05_0454 - 29135223-29135259,29135709-29135742,29136155-291362... 32 0.37
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 31 1.1
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 30 2.0
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 29 2.6
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 29 2.6
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875... 29 2.6
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 29 3.5
02_05_0063 - 25523140-25524405 29 3.5
10_08_0370 - 17259802-17261595 28 6.1
04_03_0687 + 18713603-18713962,18715318-18715539,18717068-187172... 28 6.1
01_01_0272 - 2249662-2249721,2250110-2250335,2250419-2250615,225... 28 6.1
01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398 28 6.1
08_01_0648 + 5602454-5602513,5602913-5603000,5603128-5604248,560... 28 8.0
03_05_1076 + 30180923-30181150,30181746-30181913,30182063-301822... 28 8.0
>04_04_1645 + 35024237-35024977
Length = 246
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 121 GSSNPLCP--SEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSE 282
G N C S S PSC Q R + +PA+++DD +RRR + + E
Sbjct: 18 GGGNDACSLSSSSSTASSWQWPSCTQARTLSFARHDAPASADDDDSKRRRQQEEEE 73
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 121 GSSNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDP 300
GSS L E P SGGG +R RP +N +P ++ + + +G++ + ++ P
Sbjct: 578 GSSVQLKEGNAETPKSGGGDLPKKRGRPKGSSNGTPKSNISATSSKSKGKAARKDENETP 637
Query: 301 LLESN 315
+ S+
Sbjct: 638 KVGSD 642
>02_05_0454 -
29135223-29135259,29135709-29135742,29136155-29136233,
29136330-29136623,29136727-29136861,29136956-29137222,
29137309-29137581
Length = 372
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +1
Query: 121 GSSNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDP 300
G PL P GS GG F++RRP + + SN K R+RG+ + P
Sbjct: 60 GGEPPLAPEASNGSGSSGGGGSFRKRRP----DDAKGESNSICK-RQRGKQQQQQQPCHP 114
Query: 301 LLESNDEGIGTDER 342
+ G G ER
Sbjct: 115 DQMAAAVGKGRPER 128
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +1
Query: 193 RRRPLMKTNSSPAASNDDSKERRRGRSDSETLS----DDPLLESNDEGIGTDERVDDVPV 360
+RR K ++ A NDD E G +DSE S DD E+ D G+DE D+ P
Sbjct: 194 KRRKSRKQSTEAAKENDD--EDDEGPADSEDASMGEEDDEDSEAKDNA-GSDEEPDEPPA 250
Query: 361 SAK 369
K
Sbjct: 251 KKK 253
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 307 ESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQTTLCSPSGVTKCSIVK 462
E +G T+E + VP++ K+ +L+ ETLDV Q + S V CS +
Sbjct: 262 EGGLKGATTNEESNAVPLAQKKRKLLAAAETLDVKQNS--SSVMVRPCSTAR 311
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 241 DDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVGLIE 396
+DS E R D E LS D + S+DEG+ DER + + G +E
Sbjct: 197 EDSDEERDDDGDDE-LSVDTQVLSDDEGLSNDEREVIFDMGGSNTRVKGALE 247
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 307 ESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQTT 420
E +G T+E + VP++ K+ +L+ ETLDV Q +
Sbjct: 262 EGGLKGATTNEESNAVPLAQKKRKLLAAAETLDVKQNS 299
>01_06_0880 +
32687018-32687060,32687142-32687219,32687323-32687532,
32687868-32689744
Length = 735
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 238 NDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQT 417
N D ++ RG +L D L + ND+ DD P+S KE+E V ++P+T
Sbjct: 80 NKDLDDKNRG-----SLQDHSLTQDNDQSCHLPSTQDDEPLSNKEIERV-----TNLPET 129
Query: 418 T 420
T
Sbjct: 130 T 130
>03_05_1091 +
30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +1
Query: 151 MEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSET 285
M PGSGGG R R +S S R RG +D T
Sbjct: 1 MAKPGSGGGAEAHARSRKYDYVENSNLVLGSGSGSRPRGGADEHT 45
>02_05_0063 - 25523140-25524405
Length = 421
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 142 PSEMEDPGSGGGPSCFQRRR 201
P EDPG+G GPS ++R+R
Sbjct: 175 PEFAEDPGAGPGPSSWKRKR 194
>10_08_0370 - 17259802-17261595
Length = 597
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +1
Query: 376 ELVGLIETLDVPQTTLCSPSGVTKCSIVKCISVERGLDEKV 498
+L ++ L+ + + CSPSG+T ++++C+ +R D +
Sbjct: 220 QLSSALQVLEDMRFSGCSPSGITFNTLIRCMFNQRMYDRAI 260
>04_03_0687 +
18713603-18713962,18715318-18715539,18717068-18717256,
18717419-18717612,18718193-18718328
Length = 366
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 379 LVGLIETLDVPQTTLCSPSGVTKCSIVKCISVERGLDEK 495
L L ETL+ T + PSGV K S++ + + + E+
Sbjct: 147 LSALEETLEGQTTVIVGPSGVGKSSLINALRSNQNISEE 185
>01_01_0272 -
2249662-2249721,2250110-2250335,2250419-2250615,
2250707-2250955,2251047-2251176,2251473-2251564,
2251735-2251855,2251940-2252028,2252149-2252271,
2252379-2252506,2253039-2253147,2253701-2254000
Length = 607
Score = 28.3 bits (60), Expect = 6.1
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Frame = +1
Query: 196 RRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIG--TDERVDDVPVSAK 369
RR + A +DD +E ++ S S + SD+ ++ +EG G D+ + S K
Sbjct: 13 RRRRRRRGPYAAPDDDDEEEDQQEASSSSSSSDEGEEDAEEEGSGEVDDDDGEAAEPSGK 72
Query: 370 EMELVGLIETLDVPQTTLCSPSGVTKCSIVKCISVERGLDEKV---CLRPPTLL 522
E E+ + + + S C + K E G V C R P L
Sbjct: 73 EEEVSPVAAAARSGRKASITISLKKVCKVCKSTGHEAGFKGAVYIDCPRKPCFL 126
>01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398
Length = 240
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 124 SSNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGR 270
SS P PG GGGP+ + RR +S + + RRRGR
Sbjct: 148 SSEPAMGQTEGRPGGGGGPALQRLRRHAAGKVASRSLARCREGARRRGR 196
>08_01_0648 +
5602454-5602513,5602913-5603000,5603128-5604248,
5605146-5605217,5605218-5605373,5605458-5605748
Length = 595
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 211 KTNSSPAASNDDSKERRRGRSD-SETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVG 387
+++ +S++DS ++R SD E + P +S D G+D + S KE + +
Sbjct: 340 ESDQDNGSSDEDSDDKRDQESDHDEDVPSSPYSDSKDSCDGSDSECESYESSDKEGDDLE 399
Query: 388 LIETLDVPQTTLCSPSGVT 444
++ D+ + + G+T
Sbjct: 400 DCDSNDMLENLIKVARGLT 418
>03_05_1076 +
30180923-30181150,30181746-30181913,30182063-30182281,
30182827-30182872,30183708-30183943,30184065-30184079,
30185749-30186061,30186189-30186403,30186598-30186600
Length = 480
Score = 27.9 bits (59), Expect = 8.0
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Frame = +1
Query: 175 GPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSE---TLSDDPLLESNDEGIGTDE-R 342
G S + RR + + +DD E G S+ DD E DEGIG +E R
Sbjct: 379 GLSRSKHRRKHQRRRHEFSDDDDDDDEESSGSRKSKLGGAAGDDDDEEEEDEGIGGEELR 438
Query: 343 VDDVPVSAKEMELVGLIETLDVPQTTLCSPSGVTK 447
D + KEM L ++++ + G K
Sbjct: 439 ASD--IVRKEMGLEWMLKSASSGRAESSQAGGADK 471
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.135 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,484
Number of Sequences: 37544
Number of extensions: 331260
Number of successful extensions: 916
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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