Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0924
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67948-4|AAM51500.1|  688|Caenorhabditis elegans Hypothetical pr...    34   0.11 
U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr...    34   0.11 
AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL021480-2|CAA16327.1|  391|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81462-8|CAB03846.3|  545|Caenorhabditis elegans Hypothetical pr...    28   5.5  
L14331-8|AAA28100.1|  586|Caenorhabditis elegans C.elegans homeo...    28   5.5  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    28   7.2  
U70854-10|AAB09155.1|  296|Caenorhabditis elegans Hypothetical p...    28   7.2  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    28   7.2  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U67948-4|AAM51500.1|  688|Caenorhabditis elegans Hypothetical
           protein M02E1.1b protein.
          Length = 688

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = +1

Query: 127 SNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLL 306
           S P   +E++   S GG S FQ    +  +    A+S+DDSK  +         S+   L
Sbjct: 505 SLPSSTAELKKEDSPGGCSGFQNE--IQSSIKQNASSDDDSKTSKISTPRMHATSETNQL 562

Query: 307 ESNDEGIGTDERVD 348
            S D  + +DE+VD
Sbjct: 563 NSMDFTLNSDEKVD 576


>U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical
           protein M02E1.1a protein.
          Length = 1077

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = +1

Query: 127 SNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLL 306
           S P   +E++   S GG S FQ    +  +    A+S+DDSK  +         S+   L
Sbjct: 505 SLPSSTAELKKEDSPGGCSGFQNE--IQSSIKQNASSDDDSKTSKISTPRMHATSETNQL 562

Query: 307 ESNDEGIGTDERVD 348
            S D  + +DE+VD
Sbjct: 563 NSMDFTLNSDEKVD 576


>AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical
           protein T23B12.2 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -3

Query: 196 SFENKKAHLRNPGLPFLKDKGGYWNRISKVQDSPLNCIPTTRGLIRT----ELVHLSLTW 29
           S + ++   R P  PF+K    + + +  ++D  L  +     + RT    +++H +LTW
Sbjct: 30  SIDTRRELWRKPENPFIKTPQAWVSNLDTIEDEKLGLVDLHPDIFRTSPRIDILHRNLTW 89

Query: 28  R 26
           +
Sbjct: 90  Q 90


>AL021480-2|CAA16327.1|  391|Caenorhabditis elegans Hypothetical
           protein Y39E4A.2a protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +1

Query: 145 SEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDD---SKERRRGRSDSETLSDD 297
           S  E  G GGG   F  RR ++ T+      NDD   ++  R G +DS +  +D
Sbjct: 24  STEEGDGEGGGGGDFVGRRSILTTHCHYWDENDDDMVARVERGGSTDSASSRED 77


>Z83110-6|CAB05528.3|  545|Caenorhabditis elegans Hypothetical
           protein F57C2.6 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 27/98 (27%), Positives = 44/98 (44%)
 Frame = +1

Query: 181 SCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPV 360
           S F  RR L     +P A  DD  E      +S  LS+D L+ +   G   ++ +  V  
Sbjct: 312 SNFSTRRRLFSAGGTPGAPRDDEDE-ADDVENSSMLSNDDLMLNETNGQHFNDSLSPV-- 368

Query: 361 SAKEMELVGLIETLDVPQTTLCSPSGVTKCSIVKCISV 474
             K+     + + +D P+T++ + SG T   I   IS+
Sbjct: 369 -RKD-----VTDDIDEPETSM-TTSGATASQIAINISI 399


>Z81462-8|CAB03846.3|  545|Caenorhabditis elegans Hypothetical
           protein F57C2.6 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 27/98 (27%), Positives = 44/98 (44%)
 Frame = +1

Query: 181 SCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPV 360
           S F  RR L     +P A  DD  E      +S  LS+D L+ +   G   ++ +  V  
Sbjct: 312 SNFSTRRRLFSAGGTPGAPRDDEDE-ADDVENSSMLSNDDLMLNETNGQHFNDSLSPV-- 368

Query: 361 SAKEMELVGLIETLDVPQTTLCSPSGVTKCSIVKCISV 474
             K+     + + +D P+T++ + SG T   I   IS+
Sbjct: 369 -RKD-----VTDDIDEPETSM-TTSGATASQIAINISI 399


>L14331-8|AAA28100.1|  586|Caenorhabditis elegans C.elegans homeobox
           protein 26 protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
 Frame = +1

Query: 214 TNSSPAASNDDSKERRRGRSDSETLS----DDPLLESNDEGIGTD--ERVDD 351
           TNS+P++S+  SK+   G +++ET++     + ++++ +   G D  E  DD
Sbjct: 89  TNSTPSSSSTSSKKSTEGMTETETMTASIEQEKVIQNEESEAGKDGMEEHDD 140


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 202 VVSFENKKAHLRNP-GLPFLKDKGGYWNRI 116
           V+    K A +  P G+P LK KG +WN +
Sbjct: 825 VLKLHWKPATVEQPDGIPSLKQKGSFWNTV 854


>U70854-10|AAB09155.1|  296|Caenorhabditis elegans Hypothetical
           protein F38A5.11 protein.
          Length = 296

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 244 DSKERRRGRSDSETLSDDPLLESNDE 321
           D K+ RRG SD + +  D +LE+N +
Sbjct: 80  DKKKFRRGTSDCQNIKGDVILENNKD 105


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 202 VVSFENKKAHLRNP-GLPFLKDKGGYWNRI 116
           V+    K A +  P G+P LK KG +WN +
Sbjct: 825 VLKLHWKPATVEQPDGIPSLKQKGSFWNTV 854


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 121 GSSNPLCPSEMEDPGSGGGPSCFQRRR--PLMKTNSSPAASNDDSKERRRGRSDSETLSD 294
           G  NP     M   G GG  +   R R   L +  ++ AAS++DSK+ +R R    +  +
Sbjct: 773 GRGNPSGRRGMNRIGIGGFYAKLPRHRIQALTEEAAAAAASSEDSKQAKRPRKSRRSQLE 832

Query: 295 D 297
           D
Sbjct: 833 D 833


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 193 RRRPLMKTNSSPAASNDDSKERRRGRSDSET 285
           RRR    ++SS ++S+ D  ERRR R + E+
Sbjct: 501 RRRRDSSSSSSMSSSSSDEDERRRKRREKES 531


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical
           protein T12D8.1 protein.
          Length = 2561

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = +1

Query: 121 GSSNPLCPSEMEDPGSGGGPSCFQRRR--PLMKTNSSPAASNDDSKERRRGRSDSETLSD 294
           G  NP     M   G GG  +   R R   L +  ++ AAS++DSK+ +R R    +  +
Sbjct: 773 GRGNPSGRRGMNRIGIGGFYAKLPRHRIQALTEEAAAAAASSEDSKQAKRPRKSRRSQLE 832

Query: 295 D 297
           D
Sbjct: 833 D 833


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 154 EDPGSGGGPSCFQRRRPLMKTNSSPAASN----DDSKERRRGRSD 276
           +D GS    S    RR   +  S+PA+ N    DDS ERR   SD
Sbjct: 447 DDVGSSEDRSGQDGRRVQQQNASTPASDNSSSHDDSSERRHSTSD 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,955,337
Number of Sequences: 27780
Number of extensions: 270475
Number of successful extensions: 700
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)