BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0924 (690 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U67948-4|AAM51500.1| 688|Caenorhabditis elegans Hypothetical pr... 34 0.11 U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical pr... 34 0.11 AF022982-7|AAB69933.1| 299|Caenorhabditis elegans Hypothetical ... 30 1.4 AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical ... 29 4.1 Z83110-6|CAB05528.3| 545|Caenorhabditis elegans Hypothetical pr... 28 5.5 Z81462-8|CAB03846.3| 545|Caenorhabditis elegans Hypothetical pr... 28 5.5 L14331-8|AAA28100.1| 586|Caenorhabditis elegans C.elegans homeo... 28 5.5 U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 28 7.2 U70854-10|AAB09155.1| 296|Caenorhabditis elegans Hypothetical p... 28 7.2 AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 28 7.2 Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 27 9.6 Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 27 9.6 Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 27 9.6 U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical pr... 27 9.6 >U67948-4|AAM51500.1| 688|Caenorhabditis elegans Hypothetical protein M02E1.1b protein. Length = 688 Score = 33.9 bits (74), Expect = 0.11 Identities = 23/74 (31%), Positives = 35/74 (47%) Frame = +1 Query: 127 SNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLL 306 S P +E++ S GG S FQ + + A+S+DDSK + S+ L Sbjct: 505 SLPSSTAELKKEDSPGGCSGFQNE--IQSSIKQNASSDDDSKTSKISTPRMHATSETNQL 562 Query: 307 ESNDEGIGTDERVD 348 S D + +DE+VD Sbjct: 563 NSMDFTLNSDEKVD 576 >U67948-3|AAM51499.1| 1077|Caenorhabditis elegans Hypothetical protein M02E1.1a protein. Length = 1077 Score = 33.9 bits (74), Expect = 0.11 Identities = 23/74 (31%), Positives = 35/74 (47%) Frame = +1 Query: 127 SNPLCPSEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLL 306 S P +E++ S GG S FQ + + A+S+DDSK + S+ L Sbjct: 505 SLPSSTAELKKEDSPGGCSGFQNE--IQSSIKQNASSDDDSKTSKISTPRMHATSETNQL 562 Query: 307 ESNDEGIGTDERVD 348 S D + +DE+VD Sbjct: 563 NSMDFTLNSDEKVD 576 >AF022982-7|AAB69933.1| 299|Caenorhabditis elegans Hypothetical protein T23B12.2 protein. Length = 299 Score = 30.3 bits (65), Expect = 1.4 Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = -3 Query: 196 SFENKKAHLRNPGLPFLKDKGGYWNRISKVQDSPLNCIPTTRGLIRT----ELVHLSLTW 29 S + ++ R P PF+K + + + ++D L + + RT +++H +LTW Sbjct: 30 SIDTRRELWRKPENPFIKTPQAWVSNLDTIEDEKLGLVDLHPDIFRTSPRIDILHRNLTW 89 Query: 28 R 26 + Sbjct: 90 Q 90 >AL021480-2|CAA16327.1| 391|Caenorhabditis elegans Hypothetical protein Y39E4A.2a protein. Length = 391 Score = 28.7 bits (61), Expect = 4.1 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = +1 Query: 145 SEMEDPGSGGGPSCFQRRRPLMKTNSSPAASNDD---SKERRRGRSDSETLSDD 297 S E G GGG F RR ++ T+ NDD ++ R G +DS + +D Sbjct: 24 STEEGDGEGGGGGDFVGRRSILTTHCHYWDENDDDMVARVERGGSTDSASSRED 77 >Z83110-6|CAB05528.3| 545|Caenorhabditis elegans Hypothetical protein F57C2.6 protein. Length = 545 Score = 28.3 bits (60), Expect = 5.5 Identities = 27/98 (27%), Positives = 44/98 (44%) Frame = +1 Query: 181 SCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPV 360 S F RR L +P A DD E +S LS+D L+ + G ++ + V Sbjct: 312 SNFSTRRRLFSAGGTPGAPRDDEDE-ADDVENSSMLSNDDLMLNETNGQHFNDSLSPV-- 368 Query: 361 SAKEMELVGLIETLDVPQTTLCSPSGVTKCSIVKCISV 474 K+ + + +D P+T++ + SG T I IS+ Sbjct: 369 -RKD-----VTDDIDEPETSM-TTSGATASQIAINISI 399 >Z81462-8|CAB03846.3| 545|Caenorhabditis elegans Hypothetical protein F57C2.6 protein. Length = 545 Score = 28.3 bits (60), Expect = 5.5 Identities = 27/98 (27%), Positives = 44/98 (44%) Frame = +1 Query: 181 SCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDDVPV 360 S F RR L +P A DD E +S LS+D L+ + G ++ + V Sbjct: 312 SNFSTRRRLFSAGGTPGAPRDDEDE-ADDVENSSMLSNDDLMLNETNGQHFNDSLSPV-- 368 Query: 361 SAKEMELVGLIETLDVPQTTLCSPSGVTKCSIVKCISV 474 K+ + + +D P+T++ + SG T I IS+ Sbjct: 369 -RKD-----VTDDIDEPETSM-TTSGATASQIAINISI 399 >L14331-8|AAA28100.1| 586|Caenorhabditis elegans C.elegans homeobox protein 26 protein. Length = 586 Score = 28.3 bits (60), Expect = 5.5 Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 6/52 (11%) Frame = +1 Query: 214 TNSSPAASNDDSKERRRGRSDSETLS----DDPLLESNDEGIGTD--ERVDD 351 TNS+P++S+ SK+ G +++ET++ + ++++ + G D E DD Sbjct: 89 TNSTPSSSSTSSKKSTEGMTETETMTASIEQEKVIQNEESEAGKDGMEEHDD 140 >U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology domain protein 1 protein. Length = 1346 Score = 27.9 bits (59), Expect = 7.2 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 202 VVSFENKKAHLRNP-GLPFLKDKGGYWNRI 116 V+ K A + P G+P LK KG +WN + Sbjct: 825 VLKLHWKPATVEQPDGIPSLKQKGSFWNTV 854 >U70854-10|AAB09155.1| 296|Caenorhabditis elegans Hypothetical protein F38A5.11 protein. Length = 296 Score = 27.9 bits (59), Expect = 7.2 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +1 Query: 244 DSKERRRGRSDSETLSDDPLLESNDE 321 D K+ RRG SD + + D +LE+N + Sbjct: 80 DKKKFRRGTSDCQNIKGDVILENNKD 105 >AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin protein. Length = 1346 Score = 27.9 bits (59), Expect = 7.2 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 202 VVSFENKKAHLRNP-GLPFLKDKGGYWNRI 116 V+ K A + P G+P LK KG +WN + Sbjct: 825 VLKLHWKPATVEQPDGIPSLKQKGSFWNTV 854 >Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein T12D8.1 protein. Length = 2561 Score = 27.5 bits (58), Expect = 9.6 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = +1 Query: 121 GSSNPLCPSEMEDPGSGGGPSCFQRRR--PLMKTNSSPAASNDDSKERRRGRSDSETLSD 294 G NP M G GG + R R L + ++ AAS++DSK+ +R R + + Sbjct: 773 GRGNPSGRRGMNRIGIGGFYAKLPRHRIQALTEEAAAAAASSEDSKQAKRPRKSRRSQLE 832 Query: 295 D 297 D Sbjct: 833 D 833 >Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical protein F36F2.3a protein. Length = 1128 Score = 27.5 bits (58), Expect = 9.6 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +1 Query: 193 RRRPLMKTNSSPAASNDDSKERRRGRSDSET 285 RRR ++SS ++S+ D ERRR R + E+ Sbjct: 501 RRRRDSSSSSSMSSSSSDEDERRRKRREKES 531 >Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein T12D8.1 protein. Length = 2561 Score = 27.5 bits (58), Expect = 9.6 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = +1 Query: 121 GSSNPLCPSEMEDPGSGGGPSCFQRRR--PLMKTNSSPAASNDDSKERRRGRSDSETLSD 294 G NP M G GG + R R L + ++ AAS++DSK+ +R R + + Sbjct: 773 GRGNPSGRRGMNRIGIGGFYAKLPRHRIQALTEEAAAAAASSEDSKQAKRPRKSRRSQLE 832 Query: 295 D 297 D Sbjct: 833 D 833 >U97002-4|AAB52267.1| 630|Caenorhabditis elegans Hypothetical protein K09H11.4 protein. Length = 630 Score = 27.5 bits (58), Expect = 9.6 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Frame = +1 Query: 154 EDPGSGGGPSCFQRRRPLMKTNSSPAASN----DDSKERRRGRSD 276 +D GS S RR + S+PA+ N DDS ERR SD Sbjct: 447 DDVGSSEDRSGQDGRRVQQQNASTPASDNSSSHDDSSERRHSTSD 491 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.314 0.135 0.402 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,955,337 Number of Sequences: 27780 Number of extensions: 270475 Number of successful extensions: 700 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 661 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 700 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1581836700 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (21.9 bits)
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