Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0924
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +1

Query: 178 PSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESND--EGIGTDERVDD 351
           P+C   R+    T+SS AA  +   +RR   S    L      ++ +  E I    R +D
Sbjct: 403 PNCKINRKVHHTTSSSSAAGGEGLADRRGSESSDSVLLSPEASKATEAVEFIAEHLRNED 462

Query: 352 VPVSAKE 372
           + +  +E
Sbjct: 463 LYIQTRE 469


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +1

Query: 184 CFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGI 327
           C+   RPL + N    A N+D+ +   G    + +S +     N+E I
Sbjct: 326 CWNENRPLKRRNIEIVAKNNDTLQFISGIKIIKQISSNIYERQNNEYI 373


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 154 EDPGSGGGPSCFQRRRPLMKTNSSPA 231
           +D G  G  S      P+++TNSSP+
Sbjct: 487 KDSGYDGAASTAVIHEPVVETNSSPS 512


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 273 GPASSSLFGIVVGSS 229
           GP SSS  G+V G+S
Sbjct: 21  GPGSSSAGGVVTGAS 35


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 680 HNPNSEKSYMPSES 639
           H+ N EK Y PSE+
Sbjct: 334 HSDNIEKKYPPSET 347


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 680 HNPNSEKSYMPSES 639
           H+ N EK Y PSE+
Sbjct: 334 HSDNIEKKYPPSET 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,839
Number of Sequences: 438
Number of extensions: 3233
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)