Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0924
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11430.1 68418.m01335 transcription elongation factor-related...    31   0.54 
At3g17400.1 68416.m02223 F-box family protein contains Pfam prof...    30   1.7  
At1g61040.1 68414.m06872 plus-3 domain-containing protein contai...    30   1.7  
At1g65860.1 68414.m07473 flavin-containing monooxygenase family ...    29   2.2  
At5g64030.1 68418.m08039 dehydration-responsive protein-related ...    29   2.9  
At4g36210.1 68417.m05151 expressed protein contains Pfam PF05277...    29   3.8  
At4g38150.1 68417.m05386 pentatricopeptide (PPR) repeat-containi...    28   5.1  
At3g50550.1 68416.m05528 expressed protein  isoform contains a n...    28   5.1  
At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / P...    28   6.7  
At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / P...    28   6.7  
At4g04423.1 68417.m00643 hypothetical protein                          28   6.7  
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa...    28   6.7  

>At5g11430.1 68418.m01335 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 871

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
 Frame = +1

Query: 172 GGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDD 351
           GG     +RRP  K++S   A  D++ +    +S S   S + +     +G+G D+ + D
Sbjct: 379 GGIMSRSKRRPRAKSHSVKTALKDEAAKADNEKSRSTPPSTEEI--DPMQGLGIDDELKD 436

Query: 352 VPVSAKEMELVGLIETLDVPQTTLCSPSGVTKCSI--VKCISVERGLDEKVCLRPPTLLS 525
           V      + L   +E+LD  +    SP G ++  +   +    E G D K     P  LS
Sbjct: 437 VEFLPPIVSLDEFMESLD-SEPPFESPHGNSEMQVSPSEKSDSEAGSDSKSPKGSPKELS 495

Query: 526 E 528
           +
Sbjct: 496 D 496


>At3g17400.1 68416.m02223 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 185

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/86 (25%), Positives = 36/86 (41%)
 Frame = -3

Query: 298 DRLIMSLSRTCLFFALWNRRWKQQDWS*FSLTVVSFENKKAHLRNPGLPFLKDKGGYWNR 119
           D L++ + + C    +WN  W Q  W  F  T +       H     + +   +G   NR
Sbjct: 108 DSLVLCIPKDCARLVVWNPYWGQTLW--FKPTSL---RHFPHWYMYAIGYQMRRG---NR 159

Query: 118 ISKVQDSPLNCIPTTRGLIRTELVHL 41
            +K     L C PTT+ + +  + HL
Sbjct: 160 DAKTSRWLLTCRPTTKTITKNTIDHL 185


>At1g61040.1 68414.m06872 plus-3 domain-containing protein contains
           Pfam profile PF03126: Plus-3 domain
          Length = 643

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
 Frame = +1

Query: 115 RCGSSNPLCPSEMEDPGSGGGPS---CFQRRRPLMKTNSSPAASNDDSKERRRGRSDSET 285
           R    +P    ++ D   GG  S      +R+PL  +N S ++ +D      R +SD E 
Sbjct: 190 RMKQQDPAALRKLRDASKGGSGSRDFSSTKRKPLASSNLSSSSQSDSDS---RSQSDDEG 246

Query: 286 LSDDPLLESNDE--GIGTDERVDDVPVSAKEM 375
            S+  +L+S+D+   + T E V +V +   ++
Sbjct: 247 -SNGGMLDSDDDRSDVPTFEDVKEVTIRRSKL 277


>At1g65860.1 68414.m07473 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase FMO3 (dimethylaniline
           monoxygenase (N-oxide forming) 3) GI:349533 [SP|P32417]
           from Oryctolagus cuniculus, [SP|P97501] from Mus
           musculus; contains Pfam profile PF00743 Flavin-binding
           monooxygenase-like domain
          Length = 459

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 145 KDKGGYWNRISKVQDSPLNCIPTTRGLIRTEL 50
           K  GG WN  SK    PL+ + TTR ++ T +
Sbjct: 43  KQVGGLWNYSSKADSDPLS-LDTTRTIVHTSI 73


>At5g64030.1 68418.m08039 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 829

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +1

Query: 235 SNDDSKERRRGRSDSETLSDDPLLESN------DEGIGTDERVDDVPVSAKEMELV 384
           S+DD KE + G  D+ET ++    E+N       EG   +E   D+     ++EL+
Sbjct: 208 SSDDDKENKTGNEDTETKTEKENTETNVDVQVEQEGQSKNETSGDLSPPGAQLELL 263


>At4g36210.1 68417.m05151 expressed protein contains Pfam PF05277:
           Protein of unknown function (DUF726)
          Length = 672

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 223 SPAASNDDS--KERRRGRSDSETLSDDPLL 306
           +PAA +DD   +ERR   S  +++SDDP L
Sbjct: 37  TPAAEDDDGGDEERRSNCSSGDSVSDDPSL 66


>At4g38150.1 68417.m05386 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 302

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 199 RPLMKTNSSPAASNDDSKERRR-GRSDSETLSDDPLLESNDEGIGTDERVDDVP 357
           RPL    SS +     +++    G+SD+ TLSDD  LE    G+  D R    P
Sbjct: 52  RPLRGERSSNSHREPPARQAHNLGKSDT-TLSDDGFLEQFKLGVNQDSRETPKP 104


>At3g50550.1 68416.m05528 expressed protein  isoform contains a
           non-consensus AT donor site at intron 1
          Length = 95

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 214 TNSSPAASNDDSKERRRGRSDSETLSDDPLLESNDEGIGTDERVDD 351
           T+   +  +D+ ++R     DSE+ S+D   +SN +    DE  DD
Sbjct: 27  TDGESSDEDDEEEDRNLSGDDSES-SEDDYTDSNSDSDDDDEEDDD 71


>At4g21990.1 68417.m03183 5'-adenylylsulfate reductase (APR3) / PAPS
           reductase homolog (PRH26) identical to
           5'-adenylylsulfate reductase [Arabidopsis thaliana]
           GI:2738760; identical to cDNA PAPS reductase homolog
           (PRH26) GI:1710113
          Length = 458

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 268 RSDSETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQTTL 423
           RS+   +  DP+ E  D G+G+  + + V  + +  ++   + T+DVP  TL
Sbjct: 226 RSEIPVVQVDPVFEGLDGGVGSLVKWNPV-ANVEGNDVWNFLRTMDVPVNTL 276


>At4g04610.1 68417.m00674 5'-adenylylsulfate reductase (APR1) / PAPS
           reductase homolog (PRH19) identical to
           5'-adenylylsulfate reductase [Arabidopsis thaliana]
           GI:2738756; identical to cDNA PAPS reductase homolog
           (PRH19) GI:1710111
          Length = 465

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 268 RSDSETLSDDPLLESNDEGIGTDERVDDVPVSAKEMELVGLIETLDVPQTTL 423
           RS+   +  DP+ E  D G+G+  + + V  + +  ++   + T+DVP  TL
Sbjct: 234 RSEIPVVQVDPVFEGLDGGVGSLVKWNPV-ANVEGNDVWNFLRTMDVPVNTL 284


>At4g04423.1 68417.m00643 hypothetical protein
          Length = 156

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 256 RRRGRSDSETLSDDPLLESNDEG-IGTDERVDDVPVSAKEMELVGLIETLDVPQ 414
           R  G  + E  SDD +++ +DEG I TD+   D     ++ E   LIE +   Q
Sbjct: 65  RSFGVPEREYFSDDDIIDGDDEGVITTDDDDSDTDRHWEDWEEYQLIEDMKKQQ 118


>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
           family protein low similarity to polycomb-M33
           interacting protein Ring1B [Mus musculus] GI:2239142;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 427

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 166 SGGGPSCFQRRRPLMKTNSSPAASNDDSKERRRGRSDSETLSDDP 300
           SGGG    +RRR         + +NDD  + +RG+  S   SD+P
Sbjct: 224 SGGGS---RRRRNCRNIEQDTSEANDDDDQNKRGKDSS---SDEP 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,392,828
Number of Sequences: 28952
Number of extensions: 263499
Number of successful extensions: 745
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)