Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0923
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 321 5e-89
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 316 1e-87
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 279 3e-76
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 243 2e-65
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 199 3e-52
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 139 3e-34
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 128 5e-31
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 92 7e-20
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 29 0.45
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 29 0.78
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 4.2
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 4.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 7.3
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 7.3
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 7.3
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 7.3
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.7
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces... 25 9.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.7
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 321 bits (789), Expect = 5e-89
Identities = 155/182 (85%), Positives = 167/182 (91%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 188
V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIF
Sbjct: 137 VTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIF 196
Query: 189 DLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKR 368
DLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+ N R
Sbjct: 197 DLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITGNAR 256
Query: 369 ALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVG 548
A+RRLRTACERAKRTLSSS QASIEIDSLFEGIDFYTSITRARFEEL ADLFR TMEPV
Sbjct: 257 AVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVE 316
Query: 549 EV 554
V
Sbjct: 317 RV 318
Score = 62.9 bits (146), Expect = 4e-11
Identities = 27/38 (71%), Positives = 35/38 (92%)
Frame = +1
Query: 547 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 660
E+ LRD+K+DKA +++IVLVGGSTRIP+VQKL+ DFFN
Sbjct: 316 ERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVSDFFN 353
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 316 bits (777), Expect = 1e-87
Identities = 153/182 (84%), Positives = 167/182 (91%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 188
V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIF
Sbjct: 137 VTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIF 196
Query: 189 DLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKR 368
DLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD+ N R
Sbjct: 197 DLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKDITGNAR 256
Query: 369 ALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVG 548
A+RRLRTACERAKRTLSSS QASIEIDSL+EGIDFYTSITRARFEEL ADLFR+TMEPV
Sbjct: 257 AVRRLRTACERAKRTLSSSAQASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEPVE 316
Query: 549 EV 554
+V
Sbjct: 317 KV 318
Score = 62.5 bits (145), Expect = 5e-11
Identities = 26/38 (68%), Positives = 35/38 (92%)
Frame = +1
Query: 547 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 660
EK LRD+K+DK+ +++IVLVGGSTRIP++QKL+ DFFN
Sbjct: 316 EKVLRDSKIDKSSVNEIVLVGGSTRIPRIQKLVSDFFN 353
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 279 bits (684), Expect = 3e-76
Identities = 132/184 (71%), Positives = 157/184 (85%)
Frame = +3
Query: 3 KTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVL 182
K V+ AVITVPAYF+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVL
Sbjct: 139 KRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVL 198
Query: 183 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 362
IFDLGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFKRK K D++ +
Sbjct: 199 IFDLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKIDISDD 258
Query: 363 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEP 542
RALRRLR+ACERAKR LSS TQ ++E+DSL GIDF +SITRARFE++NA F++T++P
Sbjct: 259 PRALRRLRSACERAKRALSSVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFKATIDP 318
Query: 543 VGEV 554
V +V
Sbjct: 319 VAKV 322
Score = 60.5 bits (140), Expect = 2e-10
Identities = 26/37 (70%), Positives = 33/37 (89%)
Frame = +1
Query: 550 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFN 660
K L+D+K+ KA +HDIVLVGGSTRIPKVQ+L+ DFF+
Sbjct: 321 KVLKDSKVPKADVHDIVLVGGSTRIPKVQRLVSDFFD 357
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 243 bits (595), Expect = 2e-65
Identities = 110/184 (59%), Positives = 151/184 (82%)
Frame = +3
Query: 3 KTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVL 182
K V +AV+TVPAYFND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++
Sbjct: 168 KPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIV 226
Query: 183 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 362
++DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + + RK D+ +
Sbjct: 227 VYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTKD 286
Query: 363 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEP 542
+A+ +L+ E+AKRTLSS IEI+S F G DF +++RA+FEE+N DLF+ T++P
Sbjct: 287 LKAMGKLKREVEKAKRTLSSQKSVRIEIESFFNGQDFSETLSRAKFEEINMDLFKKTLKP 346
Query: 543 VGEV 554
V +V
Sbjct: 347 VEQV 350
Score = 54.4 bits (125), Expect = 1e-08
Identities = 24/37 (64%), Positives = 32/37 (86%)
Frame = +1
Query: 547 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 657
E+ L+D+ + K++I DIVLVGGSTRIPKVQ+LL+ FF
Sbjct: 348 EQVLKDSNLKKSEIDDIVLVGGSTRIPKVQELLESFF 384
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 199 bits (486), Expect = 3e-52
Identities = 101/184 (54%), Positives = 133/184 (72%), Gaps = 4/184 (2%)
Frame = +3
Query: 3 KTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVL 182
K V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V
Sbjct: 181 KDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKKN--DAIVA 238
Query: 183 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATN 362
+FDLGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK+ DL+ +
Sbjct: 239 VFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKD 298
Query: 363 KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGI----DFYTSITRARFEELNADLFRS 530
+ A++R+R A E+AK LSS ++ I + + I+RA+FE+L L R
Sbjct: 299 RLAVQRIREAAEKAKCELSSLSKTDISLPFITADATGPKHINMEISRAQFEKLVDPLVRR 358
Query: 531 TMEP 542
T++P
Sbjct: 359 TIDP 362
Score = 38.7 bits (86), Expect = 7e-04
Identities = 13/37 (35%), Positives = 29/37 (78%)
Frame = +1
Query: 547 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 657
+++L+DA + ++I++++LVGG TR+P+V + ++ F
Sbjct: 364 KRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIF 400
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 139 bits (337), Expect = 3e-34
Identities = 72/184 (39%), Positives = 107/184 (58%), Gaps = 4/184 (2%)
Frame = +3
Query: 6 TVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----R 173
+V + VI++PA+F D QR+A +A I+GLN LR++N+ AAA+ YG+ K E R
Sbjct: 140 SVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPR 199
Query: 174 NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDL 353
V I D G + VSI+ G F +KST D +LG + D ++++F EFK KYK D+
Sbjct: 200 RVAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYFAAEFKEKYKIDV 259
Query: 354 ATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRST 533
+N +A RL TA ER K+ LS++ A + ++ + ID + I R+ FEEL L
Sbjct: 260 LSNPKATFRLATAVERLKKVLSANANAPLNVEMIMNDIDASSFIKRSDFEELIKPLLERL 319
Query: 534 MEPV 545
P+
Sbjct: 320 TPPI 323
Score = 34.3 bits (75), Expect = 0.016
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +1
Query: 547 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 657
EK+L A + K ++ I +VGG TR+P V++++ ++F
Sbjct: 324 EKALELAGIKKEDLYSIEMVGGCTRVPIVKEVIANYF 360
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 128 bits (310), Expect = 5e-31
Identities = 61/165 (36%), Positives = 104/165 (63%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIF 188
V V++VP YF D+QR+A + A +GL VL++I++P A +A ++ ++ V++
Sbjct: 163 VNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVILALMYSEEVLIDKTVVVA 222
Query: 189 DLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKR 368
+ G +VS+++++ G+ + ++ D +LGGE + +VN F +EF++K D N R
Sbjct: 223 NFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNFFAKEFEKKNGIDPRKNAR 282
Query: 369 ALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFE 503
+L +LR CE KR LS+ T AS +DSL +GIDF++SI R R++
Sbjct: 283 SLAKLRAQCEITKRVLSNGTTASAAVDSLADGIDFHSSINRLRYD 327
Score = 29.9 bits (64), Expect = 0.34
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 550 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFF 657
+++ A M+ I +++L GG++ PK+ L++ F
Sbjct: 343 EAVEKANMEPFDISEVILAGGASNTPKLTSLMESIF 378
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 91.9 bits (218), Expect = 7e-20
Identities = 60/194 (30%), Positives = 101/194 (52%), Gaps = 13/194 (6%)
Frame = +3
Query: 9 VQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKK-GTGERNVLI 185
+ + V+TVP +FN+ QR +A I +VL +I++ A AI Y L + T +I
Sbjct: 160 ITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDNVAVAIEYSLSRSFSTDPTYNII 219
Query: 186 FDLGGGTFDVSIL---TIE-------DGIFEVKSTA-GDT-HLGGEDFDNRMVNHFVQEF 329
+D G G+ +++ T+E I +++ A G T L G + + +++ F
Sbjct: 220 YDSGSGSTSATVISFDTVEGSSLGKKQNITRIRALASGFTLKLSGNEINRKLIGFMKNSF 279
Query: 330 KRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEEL 509
+K+ DL+ N RAL RL R K LS++++A I+ L +GIDF ITR+ E L
Sbjct: 280 YQKHGIDLSHNHRALARLEKEALRVKHILSANSEAIASIEELADGIDFRLKITRSVLESL 339
Query: 510 NADLFRSTMEPVGE 551
D+ + +EP+ +
Sbjct: 340 CKDMEDAAVEPINK 353
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +1
Query: 550 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDF 654
K+L+ A + ++I+ I+L GG++RIP +Q L D+
Sbjct: 353 KALKKANLTFSEINSIILFGGASRIPFIQSTLADY 387
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.5 bits (63), Expect = 0.45
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 337 NTKRTSLPTRELLGVCVLHVRGQR-GPCHRPHKRALR*ILSLR 462
N K+ LP E + + + V G GP H+PH R LR + LR
Sbjct: 9 NQKKNVLPKPEDIQLIICDVDGTLLGPDHKPHPRNLRALKYLR 51
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.7 bits (61), Expect = 0.78
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 295 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSK 185
+KSSP K VSP V SK +S V + S +P +K
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIPSSITK 239
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = -3
Query: 295 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLS 149
+ S PP P + IP PPPRS ST R P P S
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS 381
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/57 (33%), Positives = 22/57 (38%)
Frame = +3
Query: 147 LDKKGTGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHF 317
LDK G+ I GG T SIL +GI VK E F+N F
Sbjct: 48 LDKAPAGKVKDYIASHGGHTVITSILIANNGIAAVKEIRSIRKWAYETFNNERAIKF 104
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 331 LNSWTKWLTMRLSKSSPPKWVSPAVDF 251
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/72 (25%), Positives = 29/72 (40%)
Frame = -3
Query: 283 PPKWVSPAVDFTSKIPSSMVRMDTSKVPPPRSKISTFRSPVPFLSRP*AIAAAVGSLMIR 104
PP S K P V VP P S S R P+L I+ + G+L+++
Sbjct: 416 PPSIASSPESKRRKCPKKFVARPP--VPHPTSLYSQIRIGCPYLKPKLVISKSFGTLIVK 473
Query: 103 RTFKPEMVPASF 68
+ ++ +F
Sbjct: 474 NHNQLSLLKCTF 485
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 303 MVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASI 440
+++ F EFK++ K D + L+ L + C R R SS SI
Sbjct: 711 ILSSFSNEFKKRLKSDGTSIAHWLQGLASFCGRVFRRYSSLDCTSI 756
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.4 bits (53), Expect = 7.3
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -3
Query: 628 WGYEWSHPPVQYRGFEPYPSWHHGETSPTGSMVDLNRSAFSSSKRARVIDV*KS-IPSKR 452
WG + +Q++G H+G+T GS D R SK A V D + P
Sbjct: 237 WGEDGGPVSIQFKGCYVSDYDHYGDTEAFGSHPDWQRQL---SKFASVQDRLRDWKPDVA 293
Query: 451 ESISMLACV 425
E + L+C+
Sbjct: 294 EKLMHLSCL 302
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 199 AVPSTCPSLPSRMVSSR*NPPPATPTW 279
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 204 TFDVSILTIEDGIFEVKSTAGDTHL 278
TF I DG+FE GD+HL
Sbjct: 48 TFPTEIWETRDGLFEEPVGKGDSHL 72
>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 447 LSQCSLVWTMTRSSLPSHMQYANA 376
+S C ++WTM+ P HM A
Sbjct: 265 MSFCGVIWTMSGYDAPFHMSEETA 288
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 562 HGETSPTGSMVDLNRSAFSSSKRARV 485
+G T+P+ + D NRS SSS R+ +
Sbjct: 50 NGTTNPSSNFNDSNRSNISSSLRSEM 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,506
Number of Sequences: 5004
Number of extensions: 61479
Number of successful extensions: 248
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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