Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0922
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.6  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    26   4.6  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    25   8.0  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 335 FSARLWMPSEPGAFLGWRLWIASLTS 258
           F+A     S+ GAF+ W LWI  L +
Sbjct: 490 FTANFTPTSKTGAFVSWCLWITVLVA 515


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 27/108 (25%), Positives = 40/108 (37%)
 Frame = +1

Query: 175 EHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKFLPVQL 354
           EH E++  E   R +    D +     D VR A  NL  ++      + +   K    QL
Sbjct: 336 EHEEMIQNETHERFNAC-IDLITERRDDRVRLATENLM-KQLGNIKNVMDYVTKQRKYQL 393

Query: 355 IAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLL 498
           +     I  A +T               +H P   T +T SYR  +LL
Sbjct: 394 LFDKRRIRQALLTKIATKCFQLLNKQKSVHDPTYITQKTMSYRQSALL 441


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 382 AAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIY 519
           +++  C+    W E  VI   +  K   E   Y P S+LS  GK Y
Sbjct: 164 SSLPDCLDVTSWTENGVIMGARHKKYAIEGVQYHPESILSEYGKEY 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,238
Number of Sequences: 5004
Number of extensions: 57417
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)