Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0922
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 40 0.003
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 38 0.010
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 33 0.17
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 33 0.22
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458... 31 0.89
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 31 1.2
11_06_0563 - 25018219-25018658,25020381-25020459 30 2.1
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 30 2.1
03_03_0164 - 14979364-14979479,14979613-14980102 30 2.1
06_01_0243 - 1837830-1837886,1837969-1838016,1838113-1838255,183... 29 4.8
03_02_0046 - 5255513-5255630,5255715-5255876,5256579-5256733,525... 29 4.8
07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291 28 6.3
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158... 28 8.3
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371... 28 8.3
07_03_1471 + 26751684-26752307 28 8.3
04_04_0555 - 26210346-26211458,26211530-26211719,26211826-262119... 28 8.3
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +1
Query: 244 PITTDEVRDAIHNLQPRKAPGSDG--IHN--RALKFLPVQLIAMLATILNAAMTH 396
P + DE++DA+ + P KAPG DG +HN KF P+ L +L I + + +
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 37.5 bits (83), Expect = 0.010
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Frame = +1
Query: 166 ADPE-HTELVDREVERRASLPPSDAL-PPITTDEVRDAIHNLQPRKAPGSDGIHNRALKF 339
ADP + E V R + + + ++ L +E+ AI + P K+PG DG R +
Sbjct: 862 ADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQR 921
Query: 340 LPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIY 519
L + + + + P + ++ I K +P + YRPISL + + K+
Sbjct: 922 NWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPI-DLKDYRPISLCNVVYKVV 980
Query: 520 ERLLRKRL 543
+ L RL
Sbjct: 981 SKCLVNRL 988
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 33.5 bits (73), Expect = 0.17
Identities = 29/82 (35%), Positives = 39/82 (47%)
Frame = +1
Query: 424 ADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSK 603
A ++ I KPGK N YRPISL + KI ++L RL V I +D Q GF K
Sbjct: 971 AYIVLIQKPGKE-NTVDGYRPISLQNCSVKILSKVLATRL-QRVFLRMIHLD-QTGF-LK 1026
Query: 604 HSCVQQVHRLTEHILIGLNRRK 669
C+ + ++ RRK
Sbjct: 1027 GRCISENLIYATELIQACYRRK 1048
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 33.1 bits (72), Expect = 0.22
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Frame = +1
Query: 166 ADPE-HTELVDREVERRASLPPSDAL-PPITTDEVRDAIHNLQPRKAPGSDG----IHNR 327
ADP E V R ++++ + +D L I +E+ AI + P K+ G +G I+ R
Sbjct: 359 ADPSLDPECVTRLIQKKVTAAMNDKLCEDIKEEEIALAIFQIGPLKSLGPNGFPARIYQR 418
Query: 328 ALKFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTI 507
+ ++ + I +T P + ++ I +P + +RPISL + +
Sbjct: 419 NRGIMKQDIVNPVTKIFQTGLT----PMGVNDTAIVLILMSDQPV-DLKDFRPISLCNVV 473
Query: 508 GKIYERLLRKRL 543
K+ + L RL
Sbjct: 474 YKVVFKCLVNRL 485
>11_04_0144 +
14044973-14044984,14045050-14045183,14045329-14045824,
14046097-14046117,14047504-14047767,14048635-14048715
Length = 335
Score = 31.1 bits (67), Expect = 0.89
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = +1
Query: 253 TDEVRDAIHNLQPRKAPGSDGIHNRAL-KFLPV--QLIAMLATILNAAMTHCIFPAVWKE 423
T EV + I +QP KAP DGI+ L K P+ Q LA +A T + P +
Sbjct: 224 TQEVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTD-LQPI--NK 280
Query: 424 ADVIGIHKPGKPTNETSSYRPISLL 498
+ + + K P + YRPISL+
Sbjct: 281 SFITLVPKKSSP-ETVNDYRPISLM 304
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 30.7 bits (66), Expect = 1.2
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Frame = +1
Query: 163 HADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNR-ALKF 339
H D EHTE V VE ++ PS +T + A + G +L+
Sbjct: 360 HHDQEHTENVKNNVELTSADTPSSPSNSASTGNSEAVYQLVSMFAALAAQGDRAAGSLQI 419
Query: 340 LPVQLIA-MLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKI 516
L + A +LA ++ M H P E D G+P+ SS SLLS +
Sbjct: 420 LSSSIAADLLAEVVMVNMQH--LPVSHPEVDQQQSPSAGQPSGAPSS----SLLSACFPL 473
Query: 517 YERLLRK 537
E LL++
Sbjct: 474 LESLLKR 480
>11_06_0563 - 25018219-25018658,25020381-25020459
Length = 172
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 162 TRGPRTHRVSRQGGRAQSLPAALGRVTPHYHGRS*RRD 275
+ GPR R+ ++ ++ PAA G V P Y +S RR+
Sbjct: 113 SNGPRPTRIRQRRASSRPDPAAAGLVPPGYGAKSGRRE 150
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 448 PGKPTNET-SSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGF 594
P K + ET + +RPISL+ KI +LL RL + K++ D +GF
Sbjct: 377 PKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVIL--KLVSDNHYGF 424
>03_03_0164 - 14979364-14979479,14979613-14980102
Length = 201
Score = 29.9 bits (64), Expect = 2.1
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +3
Query: 156 HSTRG--PRTHRVSRQGGRAQSLPAALGRVTPHYHGRS*RRDPQPPT*EGTRLRRHPQPR 329
H+ RG P R ++GG + AA P GR RR PP LR P PR
Sbjct: 105 HTQRGSPPLPPRSGQRGGEEGEVAAA----APGGGGRRWRRRRPPPPTAAAPLRSSPNPR 160
Query: 330 AKIFASPTDSNVGY 371
+ D +GY
Sbjct: 161 SARAYLCADDELGY 174
>06_01_0243 -
1837830-1837886,1837969-1838016,1838113-1838255,
1838784-1838982,1839085-1839265,1839857-1840228,
1841453-1841658
Length = 401
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 159 STRGPRTHRVSRQGGRAQSLPAALGRVTPHYHGRS*RRDPQPP 287
++RG S G SL LG + HYH + RDP PP
Sbjct: 22 NSRGYFALGYSLPGEPFPSLHELLGAIYDHYHPQRESRDPAPP 64
>03_02_0046 -
5255513-5255630,5255715-5255876,5256579-5256733,
5256811-5256892,5257790-5257827
Length = 184
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 564 VRGNKI--PEAFPKEPFVDFSYRREETNRTV 478
V GNKI PEAFPK+ F D + T+R V
Sbjct: 126 VIGNKIDKPEAFPKQSFTDVMGLKTITDREV 156
>07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291
Length = 152
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Frame = -1
Query: 211 CARPPCRLT-RCVRGPRVECWWCIALAVHRPAAQPCHRRRMP 89
C+ PC RC G +E WC V A C R P
Sbjct: 66 CSAQPCNCVGRCCNGSTLEHPWCGLKPVRDKAIDDCFRTATP 107
>11_05_0079 +
18914668-18914753,18915123-18915338,18915829-18915895,
18916656-18916723,18916999-18917125,18918240-18918339,
18918405-18918433,18918678-18918730,18919246-18919732
Length = 410
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -3
Query: 470 VSFVGLPGLCIPITSASFHTAGKMQCVIAAFKIVANIAISWTGKNFSARLWMPSE 306
VS V L G + T+ S + + I+++I ISW K +S+ L +P E
Sbjct: 327 VSIVSLAGAAVASTTGS-EKSRIYSYLFPVLGIMSSILISWRIKQYSSALVIPEE 380
>08_01_0418 -
3716226-3716279,3716531-3716581,3716656-3716751,
3717037-3717194,3717303-3717417,3717511-3717564,
3717843-3717950,3718494-3718583,3718818-3718856,
3718993-3719172,3719264-3719576,3719659-3719834
Length = 477
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +1
Query: 235 ALPPITTDEVRDAIH--NLQPRKAPGSDGIHNRALKFLPVQLIAMLATILN 381
+ PP+T +++ +A+H L P ++ I N LP + LAT+++
Sbjct: 6 SFPPLTPEQIAEALHTYGLAPTANLRAEDIANPQPDLLPAVISNFLATVVD 56
>07_03_1471 + 26751684-26752307
Length = 207
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 311 SEPGAFLGWRLWIASLTSSVVMGGNASEGGREALRS 204
S P + + SLTS+ V G S GGR +RS
Sbjct: 5 SNPSLIVAAIFLVISLTSATVANGGRSGGGRRLVRS 40
>04_04_0555 -
26210346-26211458,26211530-26211719,26211826-26211960,
26212072-26212169,26212262-26212425,26213558-26214032
Length = 724
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 361 MLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIG 510
++ T + + C+F +K D IGI P + +R I++L G
Sbjct: 545 VIGTAMGCVIAPCVFWLFYKAFDNIGISGSDYPAPNAAVFRSIAILGVDG 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,423,052
Number of Sequences: 37544
Number of extensions: 460350
Number of successful extensions: 1407
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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