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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0922
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    40   0.003
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320...    38   0.010
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    33   0.17 
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542...    33   0.22 
11_04_0144 + 14044973-14044984,14045050-14045183,14045329-140458...    31   0.89 
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    31   1.2  
11_06_0563 - 25018219-25018658,25020381-25020459                       30   2.1  
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    30   2.1  
03_03_0164 - 14979364-14979479,14979613-14980102                       30   2.1  
06_01_0243 - 1837830-1837886,1837969-1838016,1838113-1838255,183...    29   4.8  
03_02_0046 - 5255513-5255630,5255715-5255876,5256579-5256733,525...    29   4.8  
07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291           28   6.3  
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    28   8.3  
08_01_0418 - 3716226-3716279,3716531-3716581,3716656-3716751,371...    28   8.3  
07_03_1471 + 26751684-26752307                                         28   8.3  
04_04_0555 - 26210346-26211458,26211530-26211719,26211826-262119...    28   8.3  

>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +1

Query: 244 PITTDEVRDAIHNLQPRKAPGSDG--IHN--RALKFLPVQLIAMLATILNAAMTH 396
           P + DE++DA+  + P KAPG DG  +HN     KF P+ L  +L  I +  + +
Sbjct: 152 PYSDDEIKDALFQMGPTKAPGPDGRKVHNPEHLSKFRPISLCNVLYKIASKVLAN 206


>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
            17532062-17533525
          Length = 1626

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
 Frame = +1

Query: 166  ADPE-HTELVDREVERRASLPPSDAL-PPITTDEVRDAIHNLQPRKAPGSDGIHNRALKF 339
            ADP  + E V R  + + +   ++ L      +E+  AI  + P K+PG DG   R  + 
Sbjct: 862  ADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFYQR 921

Query: 340  LPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKIY 519
                L + +   +       + P    +  ++ I K  +P  +   YRPISL + + K+ 
Sbjct: 922  NWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPI-DLKDYRPISLCNVVYKVV 980

Query: 520  ERLLRKRL 543
             + L  RL
Sbjct: 981  SKCLVNRL 988


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 29/82 (35%), Positives = 39/82 (47%)
 Frame = +1

Query: 424  ADVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSK 603
            A ++ I KPGK  N    YRPISL +   KI  ++L  RL   V    I +D Q GF  K
Sbjct: 971  AYIVLIQKPGKE-NTVDGYRPISLQNCSVKILSKVLATRL-QRVFLRMIHLD-QTGF-LK 1026

Query: 604  HSCVQQVHRLTEHILIGLNRRK 669
              C+ +       ++    RRK
Sbjct: 1027 GRCISENLIYATELIQACYRRK 1048


>11_04_0401 -
           17251759-17252208,17252545-17253022,17254235-17254290,
           17254489-17255019
          Length = 504

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
 Frame = +1

Query: 166 ADPE-HTELVDREVERRASLPPSDAL-PPITTDEVRDAIHNLQPRKAPGSDG----IHNR 327
           ADP    E V R ++++ +   +D L   I  +E+  AI  + P K+ G +G    I+ R
Sbjct: 359 ADPSLDPECVTRLIQKKVTAAMNDKLCEDIKEEEIALAIFQIGPLKSLGPNGFPARIYQR 418

Query: 328 ALKFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTI 507
               +   ++  +  I    +T    P    +  ++ I    +P  +   +RPISL + +
Sbjct: 419 NRGIMKQDIVNPVTKIFQTGLT----PMGVNDTAIVLILMSDQPV-DLKDFRPISLCNVV 473

Query: 508 GKIYERLLRKRL 543
            K+  + L  RL
Sbjct: 474 YKVVFKCLVNRL 485


>11_04_0144 +
           14044973-14044984,14045050-14045183,14045329-14045824,
           14046097-14046117,14047504-14047767,14048635-14048715
          Length = 335

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +1

Query: 253 TDEVRDAIHNLQPRKAPGSDGIHNRAL-KFLPV--QLIAMLATILNAAMTHCIFPAVWKE 423
           T EV + I  +QP KAP  DGI+   L K  P+  Q    LA   +A  T  + P    +
Sbjct: 224 TQEVDNLIKVIQPDKAPSPDGINGYFLKKCWPIISQEFYWLAAHFHACYTD-LQPI--NK 280

Query: 424 ADVIGIHKPGKPTNETSSYRPISLL 498
           + +  + K   P    + YRPISL+
Sbjct: 281 SFITLVPKKSSP-ETVNDYRPISLM 304


>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
 Frame = +1

Query: 163 HADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNR-ALKF 339
           H D EHTE V   VE  ++  PS      +T         +    A  + G     +L+ 
Sbjct: 360 HHDQEHTENVKNNVELTSADTPSSPSNSASTGNSEAVYQLVSMFAALAAQGDRAAGSLQI 419

Query: 340 LPVQLIA-MLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGKI 516
           L   + A +LA ++   M H   P    E D       G+P+   SS    SLLS    +
Sbjct: 420 LSSSIAADLLAEVVMVNMQH--LPVSHPEVDQQQSPSAGQPSGAPSS----SLLSACFPL 473

Query: 517 YERLLRK 537
            E LL++
Sbjct: 474 LESLLKR 480


>11_06_0563 - 25018219-25018658,25020381-25020459
          Length = 172

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 162 TRGPRTHRVSRQGGRAQSLPAALGRVTPHYHGRS*RRD 275
           + GPR  R+ ++   ++  PAA G V P Y  +S RR+
Sbjct: 113 SNGPRPTRIRQRRASSRPDPAAAGLVPPGYGAKSGRRE 150


>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 448 PGKPTNET-SSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGF 594
           P K + ET + +RPISL+    KI  +LL  RL   +   K++ D  +GF
Sbjct: 377 PKKTSLETVNDFRPISLMGISLKIVTKLLAGRLQGVIL--KLVSDNHYGF 424


>03_03_0164 - 14979364-14979479,14979613-14980102
          Length = 201

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +3

Query: 156 HSTRG--PRTHRVSRQGGRAQSLPAALGRVTPHYHGRS*RRDPQPPT*EGTRLRRHPQPR 329
           H+ RG  P   R  ++GG    + AA     P   GR  RR   PP      LR  P PR
Sbjct: 105 HTQRGSPPLPPRSGQRGGEEGEVAAA----APGGGGRRWRRRRPPPPTAAAPLRSSPNPR 160

Query: 330 AKIFASPTDSNVGY 371
           +       D  +GY
Sbjct: 161 SARAYLCADDELGY 174


>06_01_0243 -
           1837830-1837886,1837969-1838016,1838113-1838255,
           1838784-1838982,1839085-1839265,1839857-1840228,
           1841453-1841658
          Length = 401

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 159 STRGPRTHRVSRQGGRAQSLPAALGRVTPHYHGRS*RRDPQPP 287
           ++RG      S  G    SL   LG +  HYH +   RDP PP
Sbjct: 22  NSRGYFALGYSLPGEPFPSLHELLGAIYDHYHPQRESRDPAPP 64


>03_02_0046 -
           5255513-5255630,5255715-5255876,5256579-5256733,
           5256811-5256892,5257790-5257827
          Length = 184

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 564 VRGNKI--PEAFPKEPFVDFSYRREETNRTV 478
           V GNKI  PEAFPK+ F D    +  T+R V
Sbjct: 126 VIGNKIDKPEAFPKQSFTDVMGLKTITDREV 156


>07_01_0693 - 5242932-5243213,5245544-5245695,5246267-5246291
          Length = 152

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = -1

Query: 211 CARPPCRLT-RCVRGPRVECWWCIALAVHRPAAQPCHRRRMP 89
           C+  PC    RC  G  +E  WC    V   A   C R   P
Sbjct: 66  CSAQPCNCVGRCCNGSTLEHPWCGLKPVRDKAIDDCFRTATP 107


>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 470 VSFVGLPGLCIPITSASFHTAGKMQCVIAAFKIVANIAISWTGKNFSARLWMPSE 306
           VS V L G  +  T+ S   +     +     I+++I ISW  K +S+ L +P E
Sbjct: 327 VSIVSLAGAAVASTTGS-EKSRIYSYLFPVLGIMSSILISWRIKQYSSALVIPEE 380


>08_01_0418 -
           3716226-3716279,3716531-3716581,3716656-3716751,
           3717037-3717194,3717303-3717417,3717511-3717564,
           3717843-3717950,3718494-3718583,3718818-3718856,
           3718993-3719172,3719264-3719576,3719659-3719834
          Length = 477

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 235 ALPPITTDEVRDAIH--NLQPRKAPGSDGIHNRALKFLPVQLIAMLATILN 381
           + PP+T +++ +A+H   L P     ++ I N     LP  +   LAT+++
Sbjct: 6   SFPPLTPEQIAEALHTYGLAPTANLRAEDIANPQPDLLPAVISNFLATVVD 56


>07_03_1471 + 26751684-26752307
          Length = 207

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 311 SEPGAFLGWRLWIASLTSSVVMGGNASEGGREALRS 204
           S P   +     + SLTS+ V  G  S GGR  +RS
Sbjct: 5   SNPSLIVAAIFLVISLTSATVANGGRSGGGRRLVRS 40


>04_04_0555 -
           26210346-26211458,26211530-26211719,26211826-26211960,
           26212072-26212169,26212262-26212425,26213558-26214032
          Length = 724

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 361 MLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIG 510
           ++ T +   +  C+F   +K  D IGI     P    + +R I++L   G
Sbjct: 545 VIGTAMGCVIAPCVFWLFYKAFDNIGISGSDYPAPNAAVFRSIAILGVDG 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,423,052
Number of Sequences: 37544
Number of extensions: 460350
Number of successful extensions: 1407
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1406
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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