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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0922
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    84   8e-17
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    67   1e-11
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    67   1e-11
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    64   7e-11
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    35   0.049
U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    30   1.4  
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      30   1.4  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z83111-6|CAB05529.2|  316|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z81050-5|CAB02855.2|  367|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical ...    27   9.9  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 51/140 (36%), Positives = 78/140 (55%)
 Frame = +1

Query: 247 ITTDEVRDAIHNLQPRKAPGSDGIHNRALKFLPVQLIAMLATILNAAMTHCIFPAVWKEA 426
           IT+ E+ +    + P  A G DGI    ++ LP+   + LA + N +++  I P  WK+A
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387

Query: 427 DVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKH 606
           +VI I KP K     SSYRPISLLS I K+ E+ + KR+ + + +       Q GF+ +H
Sbjct: 388 NVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEH 443

Query: 607 SCVQQVHRLTEHILIGLNRR 666
           S    V ++T  I+ GLN +
Sbjct: 444 STTTAVIQVTNDIIGGLNMK 463


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 2/182 (1%)
 Frame = +1

Query: 160  QHADPEHTELVDREVE--RRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRAL 333
            Q  +  +TEL    V   + +S+P +   PP   +E+R  + +    KA G D I    L
Sbjct: 516  QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 575

Query: 334  KFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGK 513
            K     +I ++    N  +     P  WK +    I K G   N   +YRPI LL  + K
Sbjct: 576  KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 634

Query: 514  IYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALF 693
            ++ + L  R+   +   + +  EQ GFR   S +  +H L    L+ + R  QIP   +F
Sbjct: 635  VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVF 690

Query: 694  FD 699
             D
Sbjct: 691  ID 692


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 2/182 (1%)
 Frame = +1

Query: 160 QHADPEHTELVDREVE--RRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRAL 333
           Q  +  +TEL    V   + +S+P +   PP   +E+R  + +    KA G D I    L
Sbjct: 255 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 314

Query: 334 KFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGK 513
           K     +I ++    N  +     P  WK +    I K G   N   +YRPI LL  + K
Sbjct: 315 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 373

Query: 514 IYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALF 693
           ++ + L  R+   +   + +  EQ GFR   S +  +H L    L+ + R  QIP   +F
Sbjct: 374 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVF 429

Query: 694 FD 699
            D
Sbjct: 430 ID 431


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 2/182 (1%)
 Frame = +1

Query: 160 QHADPEHTELVDREVE--RRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRAL 333
           Q  +  +TE     V   + +S+P +   PP   +++R A+ +    KA G D I    L
Sbjct: 345 QEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFL 404

Query: 334 KFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGK 513
           K     +I ++    N  +     P  WK +    I K G   N   +YRPI LL  + K
Sbjct: 405 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 463

Query: 514 IYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALF 693
           ++ + L  R+   +   + +  EQ GFR   S +  +H L    L+ + R  QIP   +F
Sbjct: 464 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVF 519

Query: 694 FD 699
            D
Sbjct: 520 ID 521


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +1

Query: 223 PP--SDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKFLPVQLIAMLATILNAAMTH 396
           PP  ++ LPP    E+R AI++    KA GSD I    LK     +I ++    N  +  
Sbjct: 386 PPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLES 445

Query: 397 CIFPAVWKEADVIGIHKPG 453
              P  WK +    I K G
Sbjct: 446 GNIPKDWKTSKTTLIFKKG 464


>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 434 ITSASFHTAGKMQCVIAAFKIVANIAISWT 345
           + +A+F T  K+ C++ AFK + +I IS T
Sbjct: 25  VANATFLTISKLICLVVAFKFIKHIPISTT 54


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 434 ITSASFHTAGKMQCVIAAFKIVANIAISWT 345
           + +A+F T  K+ C++ AFK + +I IS T
Sbjct: 25  VANATFLTISKLICLVVAFKFIKHIPISTT 54


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 28  TLKSETTATMPPLLRPSGQPP 90
           T+ S TT T PP+  P+ QPP
Sbjct: 545 TVPSSTTQTAPPVTTPTSQPP 565


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 28  TLKSETTATMPPLLRPSGQPP 90
           T+ S TT T PP+  P+ QPP
Sbjct: 601 TVPSSTTQTAPPVTTPTSQPP 621


>Z92781-2|CAB07181.2|  397|Caenorhabditis elegans Hypothetical
           protein F09C3.3 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 671 CLRLFSPIRMCSVRRCTCCTHECLERNPNCSSMRILFAVTKS 546
           C+ L   +   + R    CTH C +  P+C  +   F   KS
Sbjct: 39  CMNLAITVNSKATRLEVKCTHSCKKHTPHCIMVEAKFMDNKS 80


>Z83111-6|CAB05529.2|  316|Caenorhabditis elegans Hypothetical
           protein F57G8.8 protein.
          Length = 316

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 157 CWWCIALAVHRPAAQPCH 104
           C W I++A+H PA   CH
Sbjct: 119 CHWLISIALHMPAVLICH 136


>Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical
           protein M02G9.2 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 617 CTHECLERNPNC 582
           C H+CL  NPNC
Sbjct: 352 CEHQCLPNNPNC 363


>Z81050-5|CAB02855.2|  367|Caenorhabditis elegans Hypothetical
           protein C50B6.6 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 337 FLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIH 444
           F P+  + M+A +L A +    F  +WK+ D +  H
Sbjct: 206 FTPLMTLIMMAMLLAATIIPQTFLTIWKKLDQLSKH 241


>AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical
           protein C16C4.6 protein.
          Length = 366

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 29  LSNPKLPLLCLPSYALQANHRHSTTMTRLS 118
           +S+P  P+L LPS AL+A  +H   +  LS
Sbjct: 57  MSSPSFPVLRLPSKALRATLQHFAIIDLLS 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,170,640
Number of Sequences: 27780
Number of extensions: 345980
Number of successful extensions: 1055
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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