BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0922 (706 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 84 8e-17 AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 67 1e-11 AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 67 1e-11 U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 64 7e-11 AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 35 0.049 U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 30 1.4 AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 30 1.4 U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 3.2 U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.2 Z92781-2|CAB07181.2| 397|Caenorhabditis elegans Hypothetical pr... 28 7.5 Z83111-6|CAB05529.2| 316|Caenorhabditis elegans Hypothetical pr... 28 7.5 Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 27 9.9 Z81050-5|CAB02855.2| 367|Caenorhabditis elegans Hypothetical pr... 27 9.9 AF016657-2|AAB93652.1| 366|Caenorhabditis elegans Hypothetical ... 27 9.9 >AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical protein R11E3.3 protein. Length = 931 Score = 84.2 bits (199), Expect = 8e-17 Identities = 51/140 (36%), Positives = 78/140 (55%) Frame = +1 Query: 247 ITTDEVRDAIHNLQPRKAPGSDGIHNRALKFLPVQLIAMLATILNAAMTHCIFPAVWKEA 426 IT+ E+ + + P A G DGI ++ LP+ + LA + N +++ I P WK+A Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387 Query: 427 DVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKH 606 +VI I KP K SSYRPISLLS I K+ E+ + KR+ + + + Q GF+ +H Sbjct: 388 NVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEH 443 Query: 607 SCVQQVHRLTEHILIGLNRR 666 S V ++T I+ GLN + Sbjct: 444 STTTAVIQVTNDIIGGLNMK 463 >AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse transcriptase protein. Length = 1066 Score = 66.9 bits (156), Expect = 1e-11 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 2/182 (1%) Frame = +1 Query: 160 QHADPEHTELVDREVE--RRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRAL 333 Q + +TEL V + +S+P + PP +E+R + + KA G D I L Sbjct: 516 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 575 Query: 334 KFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGK 513 K +I ++ N + P WK + I K G N +YRPI LL + K Sbjct: 576 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 634 Query: 514 IYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALF 693 ++ + L R+ + + + EQ GFR S + +H L L+ + R QIP +F Sbjct: 635 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVF 690 Query: 694 FD 699 D Sbjct: 691 ID 692 >AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical protein K10F12.5 protein. Length = 805 Score = 66.9 bits (156), Expect = 1e-11 Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 2/182 (1%) Frame = +1 Query: 160 QHADPEHTELVDREVE--RRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRAL 333 Q + +TEL V + +S+P + PP +E+R + + KA G D I L Sbjct: 255 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 314 Query: 334 KFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGK 513 K +I ++ N + P WK + I K G N +YRPI LL + K Sbjct: 315 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 373 Query: 514 IYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALF 693 ++ + L R+ + + + EQ GFR S + +H L L+ + R QIP +F Sbjct: 374 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVF 429 Query: 694 FD 699 D Sbjct: 430 ID 431 >U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical protein F20B4.7 protein. Length = 891 Score = 64.5 bits (150), Expect = 7e-11 Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 2/182 (1%) Frame = +1 Query: 160 QHADPEHTELVDREVE--RRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRAL 333 Q + +TE V + +S+P + PP +++R A+ + KA G D I L Sbjct: 345 QEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFL 404 Query: 334 KFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGK 513 K +I ++ N + P WK + I K G N +YRPI LL + K Sbjct: 405 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 463 Query: 514 IYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALF 693 ++ + L R+ + + + EQ GFR S + +H L L+ + R QIP +F Sbjct: 464 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVF 519 Query: 694 FD 699 D Sbjct: 520 ID 521 >AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical protein F21E9.5 protein. Length = 864 Score = 35.1 bits (77), Expect = 0.049 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Frame = +1 Query: 223 PP--SDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKFLPVQLIAMLATILNAAMTH 396 PP ++ LPP E+R AI++ KA GSD I LK +I ++ N + Sbjct: 386 PPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLES 445 Query: 397 CIFPAVWKEADVIGIHKPG 453 P WK + I K G Sbjct: 446 GNIPKDWKTSKTTLIFKKG 464 >U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein 1 protein. Length = 442 Score = 30.3 bits (65), Expect = 1.4 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 434 ITSASFHTAGKMQCVIAAFKIVANIAISWT 345 + +A+F T K+ C++ AFK + +I IS T Sbjct: 25 VANATFLTISKLICLVVAFKFIKHIPISTT 54 >AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. Length = 442 Score = 30.3 bits (65), Expect = 1.4 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 434 ITSASFHTAGKMQCVIAAFKIVANIAISWT 345 + +A+F T K+ C++ AFK + +I IS T Sbjct: 25 VANATFLTISKLICLVVAFKFIKHIPISTT 54 >U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical protein C12D12.1a protein. Length = 769 Score = 29.1 bits (62), Expect = 3.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 28 TLKSETTATMPPLLRPSGQPP 90 T+ S TT T PP+ P+ QPP Sbjct: 545 TVPSSTTQTAPPVTTPTSQPP 565 >U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical protein C12D12.1c protein. Length = 825 Score = 29.1 bits (62), Expect = 3.2 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 28 TLKSETTATMPPLLRPSGQPP 90 T+ S TT T PP+ P+ QPP Sbjct: 601 TVPSSTTQTAPPVTTPTSQPP 621 >Z92781-2|CAB07181.2| 397|Caenorhabditis elegans Hypothetical protein F09C3.3 protein. Length = 397 Score = 27.9 bits (59), Expect = 7.5 Identities = 12/42 (28%), Positives = 18/42 (42%) Frame = -3 Query: 671 CLRLFSPIRMCSVRRCTCCTHECLERNPNCSSMRILFAVTKS 546 C+ L + + R CTH C + P+C + F KS Sbjct: 39 CMNLAITVNSKATRLEVKCTHSCKKHTPHCIMVEAKFMDNKS 80 >Z83111-6|CAB05529.2| 316|Caenorhabditis elegans Hypothetical protein F57G8.8 protein. Length = 316 Score = 27.9 bits (59), Expect = 7.5 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -1 Query: 157 CWWCIALAVHRPAAQPCH 104 C W I++A+H PA CH Sbjct: 119 CHWLISIALHMPAVLICH 136 >Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical protein M02G9.2 protein. Length = 398 Score = 27.5 bits (58), Expect = 9.9 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = -3 Query: 617 CTHECLERNPNC 582 C H+CL NPNC Sbjct: 352 CEHQCLPNNPNC 363 >Z81050-5|CAB02855.2| 367|Caenorhabditis elegans Hypothetical protein C50B6.6 protein. Length = 367 Score = 27.5 bits (58), Expect = 9.9 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = +1 Query: 337 FLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIH 444 F P+ + M+A +L A + F +WK+ D + H Sbjct: 206 FTPLMTLIMMAMLLAATIIPQTFLTIWKKLDQLSKH 241 >AF016657-2|AAB93652.1| 366|Caenorhabditis elegans Hypothetical protein C16C4.6 protein. Length = 366 Score = 27.5 bits (58), Expect = 9.9 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 29 LSNPKLPLLCLPSYALQANHRHSTTMTRLS 118 +S+P P+L LPS AL+A +H + LS Sbjct: 57 MSSPSFPVLRLPSKALRATLQHFAIIDLLS 86 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,170,640 Number of Sequences: 27780 Number of extensions: 345980 Number of successful extensions: 1055 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 967 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1054 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1634564590 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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