Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0922
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 84 8e-17
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 67 1e-11
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 67 1e-11
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 64 7e-11
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 35 0.049
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 30 1.4
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 30 1.4
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 3.2
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z92781-2|CAB07181.2| 397|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z83111-6|CAB05529.2| 316|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z81050-5|CAB02855.2| 367|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF016657-2|AAB93652.1| 366|Caenorhabditis elegans Hypothetical ... 27 9.9
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 84.2 bits (199), Expect = 8e-17
Identities = 51/140 (36%), Positives = 78/140 (55%)
Frame = +1
Query: 247 ITTDEVRDAIHNLQPRKAPGSDGIHNRALKFLPVQLIAMLATILNAAMTHCIFPAVWKEA 426
IT+ E+ + + P A G DGI ++ LP+ + LA + N +++ I P WK+A
Sbjct: 328 ITSIELHNMAIKMSPSAAIGPDGIAQIHIRKLPMCGYSFLAYLYNVSLSTNIIPDKWKKA 387
Query: 427 DVIGIHKPGKPTNETSSYRPISLLSTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKH 606
+VI I KP K SSYRPISLLS I K+ E+ + KR+ + + + Q GF+ +H
Sbjct: 388 NVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAILKRIKNSIESPA----HQHGFKPEH 443
Query: 607 SCVQQVHRLTEHILIGLNRR 666
S V ++T I+ GLN +
Sbjct: 444 STTTAVIQVTNDIIGGLNMK 463
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 66.9 bits (156), Expect = 1e-11
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 2/182 (1%)
Frame = +1
Query: 160 QHADPEHTELVDREVE--RRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRAL 333
Q + +TEL V + +S+P + PP +E+R + + KA G D I L
Sbjct: 516 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 575
Query: 334 KFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGK 513
K +I ++ N + P WK + I K G N +YRPI LL + K
Sbjct: 576 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 634
Query: 514 IYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALF 693
++ + L R+ + + + EQ GFR S + +H L L+ + R QIP +F
Sbjct: 635 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVF 690
Query: 694 FD 699
D
Sbjct: 691 ID 692
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 66.9 bits (156), Expect = 1e-11
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 2/182 (1%)
Frame = +1
Query: 160 QHADPEHTELVDREVE--RRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRAL 333
Q + +TEL V + +S+P + PP +E+R + + KA G D I L
Sbjct: 255 QEIEKFYTELFKSAVSNSQTSSIPATATPPPFLPEEIRHVLRSFPNGKAAGQDKISADFL 314
Query: 334 KFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGK 513
K +I ++ N + P WK + I K G N +YRPI LL + K
Sbjct: 315 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 373
Query: 514 IYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALF 693
++ + L R+ + + + EQ GFR S + +H L L+ + R QIP +F
Sbjct: 374 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVF 429
Query: 694 FD 699
D
Sbjct: 430 ID 431
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 64.5 bits (150), Expect = 7e-11
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 2/182 (1%)
Frame = +1
Query: 160 QHADPEHTELVDREVE--RRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRAL 333
Q + +TE V + +S+P + PP +++R A+ + KA G D I L
Sbjct: 345 QEIEKFYTEFFKSAVSNSQASSIPTTATPPPFLPEKIRYALRSFPNGKAAGQDKISADFL 404
Query: 334 KFLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIHKPGKPTNETSSYRPISLLSTIGK 513
K +I ++ N + P WK + I K G N +YRPI LL + K
Sbjct: 405 KSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDREN-LENYRPICLLPVLYK 463
Query: 514 IYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALF 693
++ + L R+ + + + EQ GFR S + +H L L+ + R QIP +F
Sbjct: 464 VFTKCLLNRMRRSLDEAQPV--EQAGFRRSFSTIDHIHSLQR--LLEVGREYQIPLTLVF 519
Query: 694 FD 699
D
Sbjct: 520 ID 521
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 35.1 bits (77), Expect = 0.049
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 223 PP--SDALPPITTDEVRDAIHNLQPRKAPGSDGIHNRALKFLPVQLIAMLATILNAAMTH 396
PP ++ LPP E+R AI++ KA GSD I LK +I ++ N +
Sbjct: 386 PPIMAEPLPPFLFGEIRAAINSFPNGKAAGSDKITADFLKSCGDYVIRLITGRFNRYLES 445
Query: 397 CIFPAVWKEADVIGIHKPG 453
P WK + I K G
Sbjct: 446 GNIPKDWKTSKTTLIFKKG 464
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 434 ITSASFHTAGKMQCVIAAFKIVANIAISWT 345
+ +A+F T K+ C++ AFK + +I IS T
Sbjct: 25 VANATFLTISKLICLVVAFKFIKHIPISTT 54
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 434 ITSASFHTAGKMQCVIAAFKIVANIAISWT 345
+ +A+F T K+ C++ AFK + +I IS T
Sbjct: 25 VANATFLTISKLICLVVAFKFIKHIPISTT 54
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 28 TLKSETTATMPPLLRPSGQPP 90
T+ S TT T PP+ P+ QPP
Sbjct: 545 TVPSSTTQTAPPVTTPTSQPP 565
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 28 TLKSETTATMPPLLRPSGQPP 90
T+ S TT T PP+ P+ QPP
Sbjct: 601 TVPSSTTQTAPPVTTPTSQPP 621
>Z92781-2|CAB07181.2| 397|Caenorhabditis elegans Hypothetical
protein F09C3.3 protein.
Length = 397
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = -3
Query: 671 CLRLFSPIRMCSVRRCTCCTHECLERNPNCSSMRILFAVTKS 546
C+ L + + R CTH C + P+C + F KS
Sbjct: 39 CMNLAITVNSKATRLEVKCTHSCKKHTPHCIMVEAKFMDNKS 80
>Z83111-6|CAB05529.2| 316|Caenorhabditis elegans Hypothetical
protein F57G8.8 protein.
Length = 316
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 157 CWWCIALAVHRPAAQPCH 104
C W I++A+H PA CH
Sbjct: 119 CHWLISIALHMPAVLICH 136
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 617 CTHECLERNPNC 582
C H+CL NPNC
Sbjct: 352 CEHQCLPNNPNC 363
>Z81050-5|CAB02855.2| 367|Caenorhabditis elegans Hypothetical
protein C50B6.6 protein.
Length = 367
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 337 FLPVQLIAMLATILNAAMTHCIFPAVWKEADVIGIH 444
F P+ + M+A +L A + F +WK+ D + H
Sbjct: 206 FTPLMTLIMMAMLLAATIIPQTFLTIWKKLDQLSKH 241
>AF016657-2|AAB93652.1| 366|Caenorhabditis elegans Hypothetical
protein C16C4.6 protein.
Length = 366
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 29 LSNPKLPLLCLPSYALQANHRHSTTMTRLS 118
+S+P P+L LPS AL+A +H + LS
Sbjct: 57 MSSPSFPVLRLPSKALRATLQHFAIIDLLS 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,170,640
Number of Sequences: 27780
Number of extensions: 345980
Number of successful extensions: 1055
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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