Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0922
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    34   0.080
At5g07260.1 68418.m00828 homeobox protein-related contains weak ...    29   3.0  
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain...    28   5.2  
At4g34680.1 68417.m04923 GATA transcription factor 3, putative (...    27   9.2  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 26/65 (40%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 162 TRGP-RTHRVSRQGGRAQSLPAALGRVTPHYHGRS*RRDPQPPT*EGTRLRRHPQPRAKI 338
           +R P R HR     GR QS   +  R +P    R  RR P PP     R RR P P A+ 
Sbjct: 285 SRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARR-RRSPSPPA----RRRRSPSPPARR 339

Query: 339 FASPT 353
             SPT
Sbjct: 340 HRSPT 344


>At5g07260.1 68418.m00828 homeobox protein-related contains weak
           similarity to Homeobox protein FWA (Swiss-Prot:Q9FVI6)
           [Arabidopsis thaliana]
          Length = 541

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +1

Query: 247 ITTDEVRDAIHNLQPRKAPGSDGIHNRALKFLPVQLIAMLATILNAAMTHCIFPAVWKEA 426
           +  DE    +     R APG     +RA  F+P    +++A ++N      IFP++  + 
Sbjct: 120 LNLDEYYSKLFPWYARNAPGFVHEVSRASAFVPCDASSLVANLMNHVSWQKIFPSIIADV 179

Query: 427 DV 432
            V
Sbjct: 180 SV 181


>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein hypothetical proteins -
           Arabidopsis thaliana contains Pfam profile PF00564: PB1
           domain
          Length = 476

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 280 NLQPRKAPGSDGIHNRALKFLPVQLI 357
           NL P K+ G D I N  +KF P++ +
Sbjct: 246 NLPPIKSSGEDNIANSQVKFAPIESV 271


>At4g34680.1 68417.m04923 GATA transcription factor 3, putative
           (GATA-3) identical to GATA-binding transcription factor
           GATA-3 [Arabidopsis thaliana] gi|2959734|emb|CAA74001;
           identical to cDNA for GATA transcription factor 3
           GI:2959733
          Length = 269

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 588 ELFVYENFVRGNKIPEAFPKEPFVDFSYRREETNRTV 478
           ++ V E+  R + +PE F  E F+DFS  ++E    V
Sbjct: 26  QVIVSEDLSRTSSLPEDFSVECFLDFSEGQKEEEEEV 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,726
Number of Sequences: 28952
Number of extensions: 329519
Number of successful extensions: 853
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)